Factsheet for Solyc09g005270.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030768	Potato	mitochondrion	95.63	95.11
Solyc12g014280.1.1	Tomato	mitochondrion, plastid	81.69	72.4
Bra011945.1-P	Field mustard	mitochondrion	36.89	69.95
Bra000492.1-P	Field mustard	mitochondrion	61.2	63.28
AT2G28480.1	Thale cress	mitochondrion	62.84	61.83
KRH29618	Soybean	nucleus	46.99	60.56
CDX83289	Canola	mitochondrion	60.93	59.95
CDY31205	Canola	mitochondrion	60.93	59.95
VIT_05s0102g00700.t01	Wine grape	plastid	64.21	56.49
KRH24621	Soybean	mitochondrion	63.93	54.8
TraesCS3D01G505800.1	Wheat	mitochondrion	56.83	52.93
EES02081	Sorghum	mitochondrion	58.2	52.59
TraesCS3B01G562100.1	Wheat	mitochondrion	56.83	52.53
Zm00001d042043_P001	Maize	mitochondrion	56.28	52.28
HORVU3Hr1G110360.1	Barley	mitochondrion	56.28	51.5
Os01t0958400-02	Rice	mitochondrion	56.56	49.64
CDY15751	Canola	mitochondrion, plastid, vacuole	46.72	49.28
GSMUA_Achr3P16860_001	Banana	mitochondrion	59.56	48.77
TraesCS3A01G499000.2	Wheat	mitochondrion, nucleus	56.56	47.7
Solyc08g044250.1.1	Tomato	mitochondrion	5.46	36.36
Solyc01g105090.2.1	Tomato	plastid	34.43	33.6
Solyc06g082990.2.1	Tomato	mitochondrion	31.42	24.89
Solyc07g047900.2.1	Tomato	mitochondrion, nucleus	27.05	17.28
Solyc03g119450.2.1	Tomato	nucleus	22.4	10.0
Solyc09g083350.2.1	Tomato	mitochondrion	22.4	9.29
Solyc07g039500.2.1	Tomato	plastid	19.13	8.62
Solyc02g086200.1.1	Tomato	plastid	18.58	8.48
Solyc02g087250.2.1	Tomato	extracellular	21.04	6.11

Protein Annotations

EnsemblPlants:Solyc09g005270.2.1	EnsemblPlantsGene:Solyc09g005270.2	Gene3D:3.30.110.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf	ncoils:Coil
PANTHER:PTHR31426	PANTHER:PTHR31426:SF2	PFAM:PF01985	PFscan:PS51295	SEG:seg	SMART:SM01103
SUPFAM:SSF75471	UniParc:UPI000276AF24	UniProt:K4CQ17	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr9:-:207702..211188

Molecular Weight (calculated)

42513.3 Da

IEP (calculated)

10.536

GRAVY (calculated)

-0.822

Length

366 amino acids

Sequence
(BLAST)

001: MAIPLFRSFR RLLLLSHRRP LSSSSTSYTP ILGNRESFLH LSRFVPQNSL TRQGSCWDLR NFSHGSVNFV ITKDGKPKFE THEVEAPKKE KWKTKKRLKL
101: QRKREKKKRN AANKRDPRRL GLKGKKKKQK FDTAEERIKQ KIENAKVKEA LLIERLKRYE VTKVQGPEVK PHFLTGEERF YIKKMGQKRS NYVPIGRRGV
201: FGGVILNMHL HWKKHETVKV ICKPGQVQEY ADEIARLSGG IPIQIIADDT IVFYRGRDYV QPEIMSPIDT LSKKKALEKS KYEQSLESVR RFIAIAEKEL
301: ELYYRHVALY GDPSNRSAYS ILDDSRSTRG KRNAEIGEEN YSASKSNMLD LELEIDDSCS DDNQSL

Best Arabidopsis Sequence Match ( AT2G28480.1 )
(BLAST)

001: MAIAFARGLR KASSFLRSSY PLLISSRLLP ISQEFYDSTL TFVLPTRPIC RNFSHGYGTV NLVISEGKPK FETRELDPPK KYKWLTKKRL KLKRKKEREE
101: RNAANRKDPR RLTVKGKKKK FVNAEERIKY KLEKAKIKEA LLIERLKRYE VAKVQGPEVR PHEITGEERF YLKKMGQKRS NYVPIGRRGV FGGVILNMHL
201: HWKKHETVKV ICNNSKPGQV QQYAEELAKL SGGVPVNIIG DDTIIFYRGK GYVQPQVMSP IDTLSKKRAY EKSKYEQSLE SVRHFIAIAE KELELYYRHV
301: ALYDDPNNRN PLSILDDSPS ESRQHHENEF FLSCSDTDSS SEDEDEDEEL CELDNGSSSS SSAKEELSES EN

Arabidopsis Description

At2g28480 [Source:UniProtKB/TrEMBL;Acc:Q9SK10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.