Factsheet for Solyc07g047900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
endoplasmic reticulum 1
mitochondrion 4
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015748	Potato	nucleus, plastid	88.31	94.93
CDY66660	Canola	plastid	50.09	63.5
Bra033017.1-P	Field mustard	plastid	51.66	61.41
CDX83707	Canola	mitochondrion, nucleus, plastid	53.75	61.11
CDY13722	Canola	mitochondrion, nucleus, plastid	53.23	61.0
Bra025285.1-P	Field mustard	plastid	54.62	58.95
AT3G27550.2	Thale cress	mitochondrion	55.15	57.77
KRH56532	Soybean	mitochondrion	57.77	50.69
GSMUA_Achr9P19780_001	Banana	nucleus	49.74	50.35
KRG93197	Soybean	mitochondrion	57.24	50.23
Os05t0145300-01	Rice	mitochondrion	48.52	49.64
HORVU1Hr1G019580.2	Barley	plastid	47.82	47.9
TraesCS1A01G108800.1	Wheat	mitochondrion	49.39	46.39
TraesCS1B01G108100.1	Wheat	mitochondrion	48.87	45.9
TraesCS1D01G090300.1	Wheat	mitochondrion	48.34	45.48
Zm00001d010884_P001	Maize	mitochondrion	48.87	43.41
Zm00001d024823_P001	Maize	mitochondrion	48.69	42.66
EES17695	Sorghum	plastid	49.74	41.61
CDY03983	Canola	cytosol	50.26	39.34
Solyc08g044250.1.1	Tomato	mitochondrion	3.32	34.55
VIT_14s0066g00360.t01	Wine grape	nucleus	55.85	29.99
Solyc01g105090.2.1	Tomato	plastid	17.98	27.47
Solyc09g005270.2.1	Tomato	mitochondrion	17.28	27.05
Solyc06g082990.2.1	Tomato	mitochondrion	20.24	25.11
Solyc12g014280.1.1	Tomato	mitochondrion, plastid	17.45	24.21
Solyc09g083350.2.1	Tomato	mitochondrion	15.53	10.08
Solyc03g119450.2.1	Tomato	nucleus	14.31	10.0
Solyc07g039500.2.1	Tomato	plastid	13.26	9.36
Solyc02g086200.1.1	Tomato	plastid	11.69	8.35
Solyc02g087250.2.1	Tomato	extracellular	16.06	7.3

Protein Annotations

EnsemblPlants:Solyc07g047900.2.1	EnsemblPlantsGene:Solyc07g047900.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf	ncoils:Coil	PANTHER:PTHR31426
PANTHER:PTHR31426:SF4	PFAM:PF01985	PFscan:PS51295	SEG:seg	SMART:SM01103	SUPFAM:SSF75471
UniParc:UPI000276AE4D	UniProt:K4CEZ5	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr7:-:59106659..59110193

Molecular Weight (calculated)

65968.4 Da

IEP (calculated)

9.391

GRAVY (calculated)

-1.063

Length

573 amino acids

Sequence
(BLAST)

001: MFVCRYTQRR SIRTLTSLFS QSSLQHESMR RYDSVNIMSS SGNMMSSPVK YVKVPICNVG VRWMSGKSMR SRVAARMQNE SSKTLREIRR SKKLKLKLMT
101: DEERLIYNLR RAKKKVALLL QKLKKYELPD LPSPRHDPEL LTPEQLQAYK KIGFRNKNYV PVGVRGVFGG VVQNMHLHWK FHETVQVCCD NFPKEKIKEM
201: ASMLARLSGG IVINIHNVKT IIMFRGRNYR QPKNLIPVNT LTKRKALFKA RFEQALESQK LNIKKIEQEL RRKGINPDDP AARASIQRVA STFFNAIDKK
301: EGSPYVFQED YGTKLSHSSS VDEKHSTAED SDQEELDDFI AQIEKAADDE WAAEEEAEKE ESGRIRYWNK EDIGGRFRRS GMMGSDESDD ETGGRSSGRS
401: RTSGRKMGDD DEQDDVSEDD SELDDDDGRH THKYNAPVRH PKYKTEKWQK GKSNRPMNDG GSRRNFDPYL KGTMASDRLS DLDEAMWSSD DEDRHNKTQP
501: NEYRSSSDEG EDYDKIAIWE SDVDDAPGSR ASRRVGNSFR TSGQGQMKIN EDTRESKRKV KSSKDVDETW DSD

Best Arabidopsis Sequence Match ( AT3G27550.2 )
(BLAST)

001: MFVSRSLSRH CWRTCKWSLF SLLQSDSCVR NLVSSSNPVT SIGNSSEGNS NSFQPLMNQV FKGWSRGMST SRGRSMRSKV ESRMRKESGK TLREIRRAKK
101: LKKKLMTDEE RLIYNLKRAK KKVALLLQKL KKYDLPELPS PVHDPELFTS EQVQAFKKIG FKNKNYVPVG VRGVFGGVVQ NMHMHWKFHE TVQVCCDNFP
201: KEKIKEMASM IARLSGGVVI NIHNVKTIIM FRGRNYRQPK NLIPVNTLTK RKALFKARFE QALESQKLNI KKTEQQLRRM GVNPEDPVAM ASIHRVASTF
301: FNAIDKKEGT PYVFHGDKQS ERGTSVDNRE ESEPGDEDSD QEELDRFIAE IEEAADKEWE EEEAAEQEES GRIRYWNREE FAGRSRTPEL RSYGDASHGF
401: RRNDRDTHSQ RRPNDSDDDD DDGELDSEDD EIPKRFDRAR SSNTNTRRPR EDFKRRSPDP RPRPRAQVRS DDDVLSDLDN TMWDSEDEED APPANYISSS
501: DDDEDENRTV SASSSKQSRF RNNSSRDGIN NSKSKSGKQR DEDWDSD

Arabidopsis Description

RNA-binding CRS1 / YhbY (CRM) domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.