Factsheet for Os05t0145300-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G019580.2	Barley	plastid	70.71	69.23
TraesCS1D01G090300.1	Wheat	mitochondrion	75.18	69.13
TraesCS1B01G108100.1	Wheat	mitochondrion	74.82	68.69
TraesCS1A01G108800.1	Wheat	mitochondrion	74.64	68.52
Zm00001d010884_P001	Maize	mitochondrion	75.54	65.58
Zm00001d024823_P001	Maize	mitochondrion	74.46	63.76
EES17695	Sorghum	plastid	77.5	63.36
CDY66660	Canola	plastid	48.57	60.18
Bra033017.1-P	Field mustard	plastid	50.36	58.51
CDY13722	Canola	mitochondrion, nucleus, plastid	52.14	58.4
CDX83707	Canola	mitochondrion, nucleus, plastid	52.14	57.94
Bra025285.1-P	Field mustard	plastid	53.93	56.87
AT3G27550.2	Thale cress	mitochondrion	53.93	55.21
GSMUA_Achr9P19780_001	Banana	nucleus	52.86	52.3
PGSC0003DMT400015748	Potato	nucleus, plastid	48.04	50.47
Solyc07g047900.2.1	Tomato	mitochondrion, nucleus	49.64	48.52
KRH56532	Soybean	mitochondrion	53.57	45.94
KRG93197	Soybean	mitochondrion	53.21	45.64
CDY03983	Canola	cytosol	49.29	37.7
Os06t0304500-01	Rice	mitochondrion	19.46	31.32
VIT_14s0066g00360.t01	Wine grape	nucleus	54.11	28.4
Os01t0958400-02	Rice	mitochondrion	18.04	24.22
Os04t0492900-03	Rice	mitochondrion	19.29	22.55
Os05t0551900-00	Rice	plastid	14.64	10.49
Os11t0592400-00	Rice	plastid	15.36	9.71
Os08t0360100-01	Rice	plastid	11.79	9.1
Os04t0464800-00	Rice	plastid	13.21	8.63
Os09t0363100-01	Rice	plastid	14.11	8.34

Protein Annotations

MapMan:35.1	EntrezGene:4337792	ProteinID:AAT93999.1	ProteinID:BAS92238.1	ncoils:Coil	ProteinID:EEE62307.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920
EnsemblPlantsGene:Os05g0145300	EnsemblPlants:Os05t0145300-01	PFAM:PF01985	PFscan:PS51257	PFscan:PS51295	PANTHER:PTHR31426
PANTHER:PTHR31426:SF4	UniProt:Q6AUH9	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI000040365B
RefSeq:XP_015639864.1	InterPro:YhbY_like_sf	SEG:seg	:	:	:

Description

RNA-binding, CRM domain domain containing protein. (Os05t0145300-01);Similar to predicted protein. (Os05t0145300-02)

Coordinates

chr5:+:2609407..2612536

Molecular Weight (calculated)

64643.2 Da

IEP (calculated)

8.964

GRAVY (calculated)

-1.136

Length

560 amino acids

Sequence
(BLAST)

001: MWAVRSLRRN LLRAASSPLH PRCPLPPGSF AAGCGGEAAA AASARSALLP PPGAGGGWWR RRMMSTTKGR SMRSKVEKRM ARETGRTQRE LRRAVKLRKK
101: LMTDDERLIY SLRRAKKKVA LLLQKLKKYE LPDLPAPRHD PELLTAEQLQ AYKKIGFRNR NYVPVGVRGV FGGVVQNMHM HWKFHETVQV CCDNFPKEKI
201: KEMAAMLTRL SGGIVINIHN TKTIIMFRGR NYRQPKNLIP LNTLTKRKAL FKARFEQALE SQKLNIKKIE TQLRRKGINP EDPVAMASIQ RVASTFFRAI
301: DEQQGTPYVF RGDTQPTAGT TEIKEPHDQQ SEDSDQEELD RFIAEIETAA EQQWEEEEAA EKEESSRLRY WDREEGSERR GFNRSYDNPG NEYRDQGRYT
401: RDNNRRTADS RRWDDDSEID VSGEEWDSDD DKDNVFDNDV DAPDEHPRRF ESMRSEKSRS DRSRNYTSRG SRSSIEKPRN SATASGRSVF RESEDDELDT
501: EDDELWGPDL KEERNLRAPK VNFANYHSGT SSEEDTDDNW KQDSRTGNTR KNTDESWDSD

Best Arabidopsis Sequence Match ( AT3G27550.1 )
(BLAST)

001: MNQVFKGWSR GMSTSRGRSM RSKVESRMRK ESGKTLREIR RAKKLKKKLM TDEERLIYNL KRAKKKVALL LQKLKKYDLP ELPSPVHDPE LFTSEQVQAF
101: KKIGFKNKNY VPVGVRGVFG GVVQNMHMHW KFHETVQVCC DNFPKEKIKE MASMIARLSG GVVINIHNVK TIIMFRGRNY RQPKNLIPVN TLTKRKALFK
201: ARFEQALESQ KLNIKKTEQQ LRRMGVNPED PVAMASIHRV ASTFFNAIDK KEGTPYVFHG DKQSERGTSV DNREESEPGD EDSDQEELDR FIAEIEEAAD
301: KEWEEEEAAE QEESGRIRYW NREEFAGRSR TPELRSYGDA SHGFRRNDRD THSQRRPNDS DDDDDDGELD SEDDEIPKRF DRARSSNTNT RRPREDFKRR
401: SPDPRPRPRA QVRSDDDVLS DLDNTMWDSE DEEDAPPANY ISSSDDDEDE NRTVSASSSK QSRFRNNSSR DGINNSKSKS GKQRDEDWDS D

Arabidopsis Description

RNA-binding CRS1 / YhbY (CRM) domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.