CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033017.1-P	Field mustard	plastid	96.02	90.04
CDY13722	Canola	mitochondrion, nucleus, plastid	87.39	79.0
CDX83707	Canola	mitochondrion, nucleus, plastid	88.05	78.97
AT3G27550.2	Thale cress	mitochondrion	86.95	71.85
CDY03983	Canola	cytosol	94.03	58.06
PGSC0003DMT400015748	Potato	nucleus, plastid	61.5	52.16
Solyc07g047900.2.1	Tomato	mitochondrion, nucleus	63.5	50.09
GSMUA_Achr9P19780_001	Banana	nucleus	61.5	49.12
Os05t0145300-01	Rice	mitochondrion	60.18	48.57
KRH56532	Soybean	mitochondrion	69.91	48.39
KRG93197	Soybean	mitochondrion	69.47	48.09
HORVU1Hr1G019580.2	Barley	plastid	57.74	45.63
TraesCS1A01G108800.1	Wheat	mitochondrion	60.18	44.59
TraesCS1B01G108100.1	Wheat	mitochondrion	59.96	44.43
TraesCS1D01G090300.1	Wheat	mitochondrion	59.29	44.01
Zm00001d010884_P001	Maize	mitochondrion	59.96	42.02
Zm00001d024823_P001	Maize	mitochondrion	59.51	41.13
EES17695	Sorghum	plastid	61.28	40.44
CDX92233	Canola	cytosol	7.08	32.32
CDY34540	Canola	mitochondrion	22.79	31.79
CDY49592	Canola	mitochondrion	22.35	31.08
VIT_14s0066g00360.t01	Wine grape	nucleus	66.81	28.3
CDX83289	Canola	mitochondrion	22.79	27.69
CDY31205	Canola	mitochondrion	22.57	27.42
CDY00840	Canola	plastid	24.78	25.34
CDY27892	Canola	plastid	24.11	25.0
CDY15751	Canola	mitochondrion, plastid, vacuole	16.59	21.61
CDY70711	Canola	nucleus	8.19	14.4
CDX95528	Canola	cytosol	15.04	14.38
CDY30199	Canola	cytosol	16.15	11.39
CDY10350	Canola	plastid	20.35	10.61
CDY10696	Canola	plastid	19.69	10.4
CDX75965	Canola	plastid	18.81	10.12
CDY51940	Canola	plastid	18.58	10.01
CDY18518	Canola	plastid	17.26	9.68
CDY46704	Canola	plastid	16.15	9.32
CDY16286	Canola	plastid	17.48	9.18
CDY29740	Canola	plastid	17.26	8.88
CDY49049	Canola	plastid	17.92	8.3
CDY37526	Canola	plastid	17.92	8.26
CDY38130	Canola	golgi	14.6	5.98
CDX85512	Canola	golgi	14.16	5.84
CDX95529	Canola	plastid	1.55	2.31

Protein Annotations

MapMan:35.1	GO:A0A078JJN8	UniProt:A0A078JJN8	EnsemblPlants:CDY66660	ProteinID:CDY66660	ProteinID:CDY66660.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00055525001
InterPro:IPR001890	InterPro:IPR035920	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31426	PANTHER:PTHR31426:SF4
InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0004EEC8D8	InterPro:YhbY_like_sf	SEG:seg

Description

BnaCnng51840DBnaCnng51840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJN8]

Coordinates

chrLK035394:+:2810..5691

Molecular Weight (calculated)

52355.6 Da

IEP (calculated)

9.862

GRAVY (calculated)

-1.015

Length

452 amino acids

Sequence
(BLAST)

001: MFATRNLSRT CKRSLSSLLH SDSSRNLVLS SNHVTSNVML HPCISSDCNS NSFQSLTHQV FKSWSRAMST SRGRSMRSKV ESRMRKESGK TLREIRRAKK
101: LKKKLMTDEE RLIYNLKRAK KKVALLLQKL KKYDLPELPS PVHDPELFTP EQIQAFKKIG FKSKNYVPVG VRGVFGGVVQ NMHMHWKFHE TVQVCCDNFP
201: KEKIKEMATM IARLSGGVVI NIHNVKTIIM YRGRNYRQPK NLIPVNTLTK RKALFKARFE QALESQKLNI KKTEQQLRRM GVNPEDPVAM ASIQRVASTF
301: FNAIDKKEGS PYEELDRFIA EIEEAADKEW EEEEAAEQEE TGRIRYWNRE EFAGRSRDSS QGFRRNERDT RSQRRSNHSD DEDDDDSDQF ERDEEDAPAN
401: YISSSEEDED ENRGVSASKQ PRFSNNNSSR EGTINNSKTK NGKHKDEDWD SD

Best Arabidopsis Sequence Match ( AT3G27550.2 )
(BLAST)

001: MFVSRSLSRH CWRTCKWSLF SLLQSDSCVR NLVSSSNPVT SIGNSSEGNS NSFQPLMNQV FKGWSRGMST SRGRSMRSKV ESRMRKESGK TLREIRRAKK
101: LKKKLMTDEE RLIYNLKRAK KKVALLLQKL KKYDLPELPS PVHDPELFTS EQVQAFKKIG FKNKNYVPVG VRGVFGGVVQ NMHMHWKFHE TVQVCCDNFP
201: KEKIKEMASM IARLSGGVVI NIHNVKTIIM FRGRNYRQPK NLIPVNTLTK RKALFKARFE QALESQKLNI KKTEQQLRRM GVNPEDPVAM ASIHRVASTF
301: FNAIDKKEGT PYVFHGDKQS ERGTSVDNRE ESEPGDEDSD QEELDRFIAE IEEAADKEWE EEEAAEQEES GRIRYWNREE FAGRSRTPEL RSYGDASHGF
401: RRNDRDTHSQ RRPNDSDDDD DDGELDSEDD EIPKRFDRAR SSNTNTRRPR EDFKRRSPDP RPRPRAQVRS DDDVLSDLDN TMWDSEDEED APPANYISSS
501: DDDEDENRTV SASSSKQSRF RNNSSRDGIN NSKSKSGKQR DEDWDSD

Arabidopsis Description

RNA-binding CRS1 / YhbY (CRM) domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.