CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51940	Canola	plastid	97.26	97.38
Bra001704.1-P	Field mustard	plastid	97.14	97.14
CDX95528	Canola	cytosol	52.38	93.02
CDY18518	Canola	plastid	84.64	88.21
AT3G18390.1	Thale cress	plastid	86.07	85.26
CDX95529	Canola	plastid	25.83	71.62
CDX92233	Canola	cytosol	8.21	69.7
VIT_17s0000g03610.t01	Wine grape	plastid	61.07	61.81
KRH48490	Soybean	nucleus	56.9	60.43
TraesCS1A01G376400.1	Wheat	plastid	51.19	60.22
KRH39182	Soybean	plastid	56.55	60.05
GSMUA_Achr3P26360_001	Banana	plastid	54.17	59.24
Solyc03g119450.2.1	Tomato	nucleus	57.74	59.15
Os05t0551900-00	Rice	plastid	54.76	58.82
PGSC0003DMT400014644	Potato	plastid	57.38	58.5
KXG22496	Sorghum	plastid	54.76	57.43
HORVU1Hr1G083550.4	Barley	plasma membrane	52.86	57.29
KRH41639	Soybean	mitochondrion, plastid	49.4	57.08
TraesCS1D01G383500.1	Wheat	mitochondrion, plastid	52.86	57.0
Zm00001d038922_P001	Maize	extracellular	53.57	56.6
TraesCS1B01G396800.2	Wheat	plastid	52.74	55.93
CDY30199	Canola	cytosol	30.48	39.94
CDY46704	Canola	plastid	32.98	35.38
CDY10696	Canola	plastid	34.88	34.23
CDY10350	Canola	plastid	34.88	33.79
CDY16286	Canola	plastid	34.29	33.45
CDY29740	Canola	plastid	34.4	32.92
CDY70711	Canola	nucleus	9.88	32.3
CDY49049	Canola	plastid	32.26	27.77
CDY37526	Canola	plastid	32.02	27.42
CDY34540	Canola	mitochondrion	9.52	24.69
CDY49592	Canola	mitochondrion	9.4	24.31
CDX85512	Canola	golgi	30.12	23.08
CDY38130	Canola	golgi	29.4	22.39
CDY31205	Canola	mitochondrion	9.88	22.31
CDX83289	Canola	mitochondrion	9.76	22.04
CDY27892	Canola	plastid	10.71	20.64
CDY00840	Canola	plastid	10.83	20.59
CDY66660	Canola	plastid	10.12	18.81
CDY15751	Canola	mitochondrion, plastid, vacuole	7.26	17.58
CDY13722	Canola	mitochondrion, nucleus, plastid	10.24	17.2
CDX83707	Canola	mitochondrion, nucleus, plastid	10.24	17.06
CDY03983	Canola	cytosol	10.12	11.61

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	GO:A0A078CGI3	EnsemblPlants:CDX75965	ProteinID:CDX75965	ProteinID:CDX75965.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00123998001
InterPro:IPR001890	InterPro:IPR035920	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF4
InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0004EEEA68	InterPro:YhbY_like_sf	SEG:seg

Description

BnaC03g40480D

Coordinates

chrLK031805:+:2209029..2213130

Molecular Weight (calculated)

95846.2 Da

IEP (calculated)

5.342

GRAVY (calculated)

-0.786

Length

840 amino acids

Sequence
(BLAST)

001: MAALLPTNIT EMPLRSPFLL TSTSRYSSSP SLHALIFHSL SPKPYRHIVQ PFSSLRTSER NNRSHNNRRS DHRNPKPTPP WIDKWPPSSS DEKANERGKL
101: QSSEEESEAK RRYLEKDKGQ SSIERIVLRL RNLGLAASDD DEDDDDNGEE DVKKPVTGEE RLGDLLKREW VRPDVILAEE EEEEESDDDD VLLPWEKNEE
201: EQLAERNEGD GGVAAVKKRR ARAPSLAELT VEDSELRRLR RDGMYLRVRI NIPKAGLTQA VMEKIHDTWR KEELVRLKFH EVLARDMKTA HEIVERRTGG
301: MVIWRAGSVM VVYRGRDYQG PSAVSNQMAR PEETLFVPDV SSAGDEATNA KDNNQNAHPE IKDPIVKNPI RKESMTEEEA EFNQLLDSLG PRFQEYWGTG
401: VLPVDADLLP PTIPGYKTPF RLLPTGMRSN LTNAEMTNLR KIGKTLPCHF ALGRNRNHQG LAAAILKLWE KSLIAKIAVK RGIQNTNNKL MAEEIKTLTG
501: GVLLLRNKYY IVIYRGKDFL PSSVAATLAE RQELTKEIQD VEEKVRNRDI EATQPVGDKV PAEAGTLAEF YEAQARWGKE ITPDHREKMI EEASRVASAR
601: VVKRIQHKLN LAQSKFQRAE KLLSKVEASM IPSGPDYDQE VISEEERIMF RKVGLKMKSY LPLGIRGVFD GVIENMHLHW KHRELVKLIS KQKSLAFVED
701: TARLLEYESG GVLVAIEKVP KGFALIYYRG KNYQRPISLR PRNLLTKAKA LKRSIAMQRH EALSQHISEL EKTIEQMQNE LTAKNPSYNE SEWENDDDDD
801: DDEDGEEEEK DDAEDDESDW DEADGESTIS SLEEADYPLR

Best Arabidopsis Sequence Match ( AT3G18390.1 )
(BLAST)

001: MALAPLNFTE MPLRSSLPLT SSSRYCSSPS LHALLFYSLG VKPSRQQIVR PFSSLRTSER SNNRSNNNRR LDQRNHKPTP PWIDKWPPSS SGAGGDHAGK
101: KGGENNGGDR IRSAEEEAEA KLRYLEKDKG QNAIERIVLR LRNLGLGSDD EDDVEDDEGG GINGGDVKPV TGEERLGDLL KREWVRPDMM LAEGEESEEE
201: DEVLLPWEKN EEEQAAERVV GEGGVAVMQK RRARAPSLAE LTVEDSELRR LRRDGMYLRV RINIPKAGLT QAVMEKIYDT WRKEELVRLK FHEVLARDMK
301: TAHEIVERRT GGMVIWRAGS VMVVYRGLDY KGPPVISNQM AGPKETLFVP DVSSAGDEAT NAKDNQSAPL VIKDPIIKNP IRKENMTEEE VEFNSLLDSL
401: GPRFQEWWGT GVLPVDADLL PPTIPGYKTP FRLLPTGMRS NLTNAEMTNL RKIGKTLPCH FALGRNRNHQ GLAAAILQIW EKSLIAKIAV KRGIQNTNNK
501: LMADEVKTLT GGVLLLRNKY YIVIYRGKDF LPSSVAATLA ERQELTKEIQ DVEERVRNRE IEAVQPVGDK VPAEAGTLAE FYEAQARWGK EITPDHREKM
601: IEEASRVANA RVVKRIQHKL NLAQSKFQRA EKLLSKIEAS MIPNGPDYDQ EVISEEERAM FRKVGLKMKA YLPIGIRGVF DGVIENMHLH WKHRELVKLI
701: SKQKNQAFVE ETARLLEYES GGVLVAIEKV PKGFALIYYR GKNYRRPISL RPRNLLTKAK ALKRSIAMQR HEALSQHISE LERTIEQMQS QLTSKNPSYS
801: ESEWENDEDD DDDEEEEKDD VEDNESDWDE TDGESAISSI EEADMSSR

Arabidopsis Description

EMB1865CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9LS51]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.