Factsheet for Zm00001d038922_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 22192489

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22496	Sorghum	plastid	92.2	91.51
Os05t0551900-00	Rice	plastid	80.0	81.33
TraesCS1A01G376400.1	Wheat	plastid	71.82	79.97
HORVU1Hr1G083550.4	Barley	plasma membrane	76.98	78.97
TraesCS1D01G383500.1	Wheat	mitochondrion, plastid	76.23	77.79
TraesCS1B01G396800.2	Wheat	plastid	76.6	76.89
GSMUA_Achr3P26360_001	Banana	plastid	60.25	62.37
CDX95528	Canola	cytosol	36.35	61.1
CDX92233	Canola	cytosol	7.3	58.59
VIT_17s0000g03610.t01	Wine grape	plastid	59.62	57.11
Solyc03g119450.2.1	Tomato	nucleus	57.23	55.49
PGSC0003DMT400014644	Potato	plastid	57.11	55.1
KRH48490	Soybean	nucleus	54.59	54.87
KRH39182	Soybean	plastid	54.34	54.61
CDY18518	Canola	plastid	54.84	54.09
CDX75965	Canola	plastid	56.6	53.57
CDY51940	Canola	plastid	56.48	53.52
Bra001704.1-P	Field mustard	plastid	56.48	53.45
KRH41639	Soybean	mitochondrion, plastid	48.68	53.23
Bra037586.1-P	Field mustard	plastid	54.47	53.0
AT3G18390.1	Thale cress	plastid	55.85	52.36
Bra022317.1-P	Field mustard	cytosol, endoplasmic reticulum	8.93	46.71
CDX95529	Canola	plastid	16.73	43.89
Zm00001d007572_P001	Maize	plastid	37.11	35.04
Zm00001d032373_P004	Maize	plastid	31.82	32.56
Zm00001d020230_P006	Maize	plastid	35.6	29.36
Zm00001d025706_P002	Maize	mitochondrion	11.45	26.92
Zm00001d025629_P007	Maize	plastid	30.94	23.68
Zm00001d025633_P007	Maize	plastid	30.94	23.68
Zm00001d042043_P001	Maize	mitochondrion	10.44	21.07
Zm00001d003196_P001	Maize	mitochondrion	12.08	19.79
Zm00001d010884_P001	Maize	mitochondrion	9.81	12.09
Zm00001d024823_P001	Maize	mitochondrion	9.81	11.93

Protein Annotations

EntrezGene:103630698	Gene3D:3.30.110.60	MapMan:35.1	UniProt:A0A1D6MBV0	ProteinID:AQK88234.1	InterPro:Cavin_fam
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536
GO:GO:0009719	GO:GO:0009737	InterPro:IPR001890	InterPro:IPR035920	PFAM:PF01985	PFAM:PF15237
PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF4	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471
UniParc:UPI0004DE9746	InterPro:YhbY_like_sf	EnsemblPlantsGene:Zm00001d038922	EnsemblPlants:Zm00001d038922_P001	EnsemblPlants:Zm00001d038922_T001	SEG:seg

Description

CRS1/YhbY (CRM) domain-containing protein

Coordinates

chr6:-:166977536..166982310

Molecular Weight (calculated)

88827.8 Da

IEP (calculated)

5.952

GRAVY (calculated)

-0.569

Length

795 amino acids

Sequence
(BLAST)

001: MALSELPLHH SFRLSSRPSI HSLLPLRLLS SSSSSSSAAA ASASSPSSTG GNRAAPSTGA PWLQRWAPSD PSRPAPAPAP IPSPTTSIDR IVHRLRNLGL
101: ASDEDDPSAS ASASAATAAA PPDGTERLGD LLHRGWARPD HQFAAAGFDD AVLPWERDDE TTGPVRDEED GTKRRRVKAP TLAELTIEDG ELRRLRRLGM
201: TLRDRITVPK AGVTTAVTEK IHDAWRKSEL VRLKFHEDLA HDMKTAHELV ERRTGGLIIW RSGSVMVVYR GSNYKRPLKS QALNGASSPV KGEDGALFIP
301: DASNPVESNI QGTGLATQYA NVSLLNSQNT EDMTEEELEF NQMLDELGPR FVDWWGTGIL PVDADLLPQT IPGYKTPYRV LPTGMRSTLT NAELTNLRKL
401: ARNLPCHFAL GRNRNHQGLS AAIVKLWEKS LVVKIAVKRG IQNTNNKIMA EEIKNLTGGT LLLRNKFYIV IYRGKDFLPT SVAAVLAERE ELTKDIYNME
501: EQRRRVLITQ PSDDGLDGHA LAGTLAEFQE AQARWGREVT AKEQEEMKEA SSRSEKQKLY RKLEHKLSIA QAKIHRAERL LSKIEASLVL ADPCDDQEMI
601: TDEEKSVFRR IGLRLKAYLP LGVRGVFDGV IENMHLHWKH REVVKLISKQ KTLSFVEETA RLLAYESGGI LVAIERVPKG YALIFYRGKN YRRPINIRPR
701: NLLTKAKALK RAVAMQRHEA LSQHIDQLES NIKQMKLDLG IEDYEEQDED SSDSENEYDN AVTSVSYDED QDDFDESADE DEYDDYDDED DEIDS

Best Arabidopsis Sequence Match ( AT3G18390.1 )
(BLAST)

001: MALAPLNFTE MPLRSSLPLT SSSRYCSSPS LHALLFYSLG VKPSRQQIVR PFSSLRTSER SNNRSNNNRR LDQRNHKPTP PWIDKWPPSS SGAGGDHAGK
101: KGGENNGGDR IRSAEEEAEA KLRYLEKDKG QNAIERIVLR LRNLGLGSDD EDDVEDDEGG GINGGDVKPV TGEERLGDLL KREWVRPDMM LAEGEESEEE
201: DEVLLPWEKN EEEQAAERVV GEGGVAVMQK RRARAPSLAE LTVEDSELRR LRRDGMYLRV RINIPKAGLT QAVMEKIYDT WRKEELVRLK FHEVLARDMK
301: TAHEIVERRT GGMVIWRAGS VMVVYRGLDY KGPPVISNQM AGPKETLFVP DVSSAGDEAT NAKDNQSAPL VIKDPIIKNP IRKENMTEEE VEFNSLLDSL
401: GPRFQEWWGT GVLPVDADLL PPTIPGYKTP FRLLPTGMRS NLTNAEMTNL RKIGKTLPCH FALGRNRNHQ GLAAAILQIW EKSLIAKIAV KRGIQNTNNK
501: LMADEVKTLT GGVLLLRNKY YIVIYRGKDF LPSSVAATLA ERQELTKEIQ DVEERVRNRE IEAVQPVGDK VPAEAGTLAE FYEAQARWGK EITPDHREKM
601: IEEASRVANA RVVKRIQHKL NLAQSKFQRA EKLLSKIEAS MIPNGPDYDQ EVISEEERAM FRKVGLKMKA YLPIGIRGVF DGVIENMHLH WKHRELVKLI
701: SKQKNQAFVE ETARLLEYES GGVLVAIEKV PKGFALIYYR GKNYRRPISL RPRNLLTKAK ALKRSIAMQR HEALSQHISE LERTIEQMQS QLTSKNPSYS
801: ESEWENDEDD DDDEEEEKDD VEDNESDWDE TDGESAISSI EEADMSSR

Arabidopsis Description

EMB1865CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9LS51]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.