Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G376400.1 | Wheat | plastid | 89.68 | 97.34 |
| TraesCS1D01G383500.1 | Wheat | mitochondrion, plastid | 96.52 | 96.02 |
| TraesCS1B01G396800.2 | Wheat | plastid | 95.61 | 93.56 |
| Os05t0551900-00 | Rice | plastid | 80.39 | 79.67 |
| KXG22496 | Sorghum | plastid | 81.03 | 78.4 |
| Zm00001d038922_P001 | Maize | extracellular | 78.97 | 76.98 |
| CDX95528 | Canola | cytosol | 37.81 | 61.95 |
| CDX92233 | Canola | cytosol | 7.87 | 61.62 |
| GSMUA_Achr3P26360_001 | Banana | plastid | 60.65 | 61.2 |
| VIT_17s0000g03610.t01 | Wine grape | plastid | 58.45 | 54.58 |
| CDY18518 | Canola | plastid | 55.87 | 53.72 |
| Solyc03g119450.2.1 | Tomato | nucleus | 56.77 | 53.66 |
| KRH48490 | Soybean | nucleus | 54.71 | 53.6 |
| KRH39182 | Soybean | plastid | 54.19 | 53.1 |
| PGSC0003DMT400014644 | Potato | plastid | 56.39 | 53.03 |
| CDX75965 | Canola | plastid | 57.29 | 52.86 |
| CDY51940 | Canola | plastid | 57.03 | 52.68 |
| Bra037586.1-P | Field mustard | plastid | 55.48 | 52.63 |
| Bra001704.1-P | Field mustard | plastid | 57.03 | 52.62 |
| KRH41639 | Soybean | mitochondrion, plastid | 49.29 | 52.54 |
| AT3G18390.1 | Thale cress | plastid | 56.77 | 51.89 |
| Bra022317.1-P | Field mustard | cytosol, endoplasmic reticulum | 9.42 | 48.03 |
| HORVU1Hr1G001270.1 | Barley | cytosol, nucleus | 6.45 | 40.98 |
| CDX95529 | Canola | plastid | 15.48 | 39.6 |
| HORVU7Hr1G052190.1 | Barley | plastid | 36.77 | 32.13 |
| HORVU5Hr1G057460.1 | Barley | nucleus, plastid | 34.06 | 26.32 |
| HORVU2Hr1G081140.2 | Barley | plastid | 32.9 | 23.44 |
| HORVU3Hr1G110360.1 | Barley | mitochondrion | 9.94 | 19.25 |
| HORVU2Hr1G084980.4 | Barley | plastid | 12.39 | 17.08 |
| HORVU1Hr1G019580.2 | Barley | plastid | 10.19 | 13.81 |
Protein Annotations
| Gene3D:3.30.110.60 | MapMan:35.1 | UniProt:A0A287GIV0 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009719 | GO:GO:0009737 | EnsemblPlantsGene:HORVU1Hr1G083550 |
| EnsemblPlants:HORVU1Hr1G083550.4 | InterPro:IPR001890 | InterPro:IPR035920 | PFAM:PF01985 | PFscan:PS51295 | PANTHER:PTHR31846 |
| PANTHER:PTHR31846:SF4 | InterPro:RNA-binding_CRM | SMART:SM01103 | SUPFAM:SSF75471 | UniParc:UPI000B47774E | InterPro:YhbY_like_sf |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:532013898..532018480
Molecular Weight (calculated)
86831.0 Da
IEP (calculated)
6.728
GRAVY (calculated)
-0.633
Length
775 amino acids
Sequence
(BLAST)
(BLAST)
001: ELPLHHSFRL SSRPLLPLRL LSLSRPASSS SASPTAAAAA APSSSGRNRA PPAPSRGGAP WMQKWAPADP SAPAPAPSPG HAPSTSIDRI VHRLRNLGLG
101: TDDDEPSSAA VSAPLDGRER LGDLLDRSWA RPDRQFAASG LDEAVLPWER DRESDGEEVD GVKRKRVRAP SLAELTMDDV ELRRLRGMGM TLKDRITVPK
201: AGVTQAITEK IHDAWRKSEL VRLKFHEDLA NDMKTAHELV ERRTGGLIIW RAGSVMVVYR GSNYTRPLKS QTLDGTSSPR KQEDSALFIP NGSSTVENDN
301: QGKDLAAQHD NAPILDLHNT EDMTEEELEF NQMLDELGPR FVDWWGTGIL PVDADLLPQT IPGYKAPFRV LPTGMRTSLT NSELTNLRKL ARNLPCHFAL
401: GRNRNHQGLA AAIVKLWEKS LVVKIAVKRG IQNTNNKLMS DEIKNLTGGT LLLRNKYYIV IYRGKDFLPT SVAAALAERE ELTKDIQNLE EQRRSISIEH
501: SPEDGFEGHA LVGTLAEFQE AQARWGRNVT SKEQQEMKEA SFRSEKEKLF RRLEHKLSIA QAKIHRAGKL LSKIEASMVL ANPSDDREMI TAEERSVFRR
601: IGLKMKAYLP VGIRGVFDGV IENMHLHWKH REVVKLITKQ KTLAFVEETA RLLEYESGGI LVAIERVPKG HALIFYRGKN YRRPINIRPR NLLTKAKALK
701: RAVAMQRHEA LSQHIDQLEI NMKQMKRDLG MEDYDEEGGD GSDSESEDDT AGYDEGMEDY DKEEEDESDS EDEDN
101: TDDDEPSSAA VSAPLDGRER LGDLLDRSWA RPDRQFAASG LDEAVLPWER DRESDGEEVD GVKRKRVRAP SLAELTMDDV ELRRLRGMGM TLKDRITVPK
201: AGVTQAITEK IHDAWRKSEL VRLKFHEDLA NDMKTAHELV ERRTGGLIIW RAGSVMVVYR GSNYTRPLKS QTLDGTSSPR KQEDSALFIP NGSSTVENDN
301: QGKDLAAQHD NAPILDLHNT EDMTEEELEF NQMLDELGPR FVDWWGTGIL PVDADLLPQT IPGYKAPFRV LPTGMRTSLT NSELTNLRKL ARNLPCHFAL
401: GRNRNHQGLA AAIVKLWEKS LVVKIAVKRG IQNTNNKLMS DEIKNLTGGT LLLRNKYYIV IYRGKDFLPT SVAAALAERE ELTKDIQNLE EQRRSISIEH
501: SPEDGFEGHA LVGTLAEFQE AQARWGRNVT SKEQQEMKEA SFRSEKEKLF RRLEHKLSIA QAKIHRAGKL LSKIEASMVL ANPSDDREMI TAEERSVFRR
601: IGLKMKAYLP VGIRGVFDGV IENMHLHWKH REVVKLITKQ KTLAFVEETA RLLEYESGGI LVAIERVPKG HALIFYRGKN YRRPINIRPR NLLTKAKALK
701: RAVAMQRHEA LSQHIDQLEI NMKQMKRDLG MEDYDEEGGD GSDSESEDDT AGYDEGMEDY DKEEEDESDS EDEDN
001: MALAPLNFTE MPLRSSLPLT SSSRYCSSPS LHALLFYSLG VKPSRQQIVR PFSSLRTSER SNNRSNNNRR LDQRNHKPTP PWIDKWPPSS SGAGGDHAGK
101: KGGENNGGDR IRSAEEEAEA KLRYLEKDKG QNAIERIVLR LRNLGLGSDD EDDVEDDEGG GINGGDVKPV TGEERLGDLL KREWVRPDMM LAEGEESEEE
201: DEVLLPWEKN EEEQAAERVV GEGGVAVMQK RRARAPSLAE LTVEDSELRR LRRDGMYLRV RINIPKAGLT QAVMEKIYDT WRKEELVRLK FHEVLARDMK
301: TAHEIVERRT GGMVIWRAGS VMVVYRGLDY KGPPVISNQM AGPKETLFVP DVSSAGDEAT NAKDNQSAPL VIKDPIIKNP IRKENMTEEE VEFNSLLDSL
401: GPRFQEWWGT GVLPVDADLL PPTIPGYKTP FRLLPTGMRS NLTNAEMTNL RKIGKTLPCH FALGRNRNHQ GLAAAILQIW EKSLIAKIAV KRGIQNTNNK
501: LMADEVKTLT GGVLLLRNKY YIVIYRGKDF LPSSVAATLA ERQELTKEIQ DVEERVRNRE IEAVQPVGDK VPAEAGTLAE FYEAQARWGK EITPDHREKM
601: IEEASRVANA RVVKRIQHKL NLAQSKFQRA EKLLSKIEAS MIPNGPDYDQ EVISEEERAM FRKVGLKMKA YLPIGIRGVF DGVIENMHLH WKHRELVKLI
701: SKQKNQAFVE ETARLLEYES GGVLVAIEKV PKGFALIYYR GKNYRRPISL RPRNLLTKAK ALKRSIAMQR HEALSQHISE LERTIEQMQS QLTSKNPSYS
801: ESEWENDEDD DDDEEEEKDD VEDNESDWDE TDGESAISSI EEADMSSR
101: KGGENNGGDR IRSAEEEAEA KLRYLEKDKG QNAIERIVLR LRNLGLGSDD EDDVEDDEGG GINGGDVKPV TGEERLGDLL KREWVRPDMM LAEGEESEEE
201: DEVLLPWEKN EEEQAAERVV GEGGVAVMQK RRARAPSLAE LTVEDSELRR LRRDGMYLRV RINIPKAGLT QAVMEKIYDT WRKEELVRLK FHEVLARDMK
301: TAHEIVERRT GGMVIWRAGS VMVVYRGLDY KGPPVISNQM AGPKETLFVP DVSSAGDEAT NAKDNQSAPL VIKDPIIKNP IRKENMTEEE VEFNSLLDSL
401: GPRFQEWWGT GVLPVDADLL PPTIPGYKTP FRLLPTGMRS NLTNAEMTNL RKIGKTLPCH FALGRNRNHQ GLAAAILQIW EKSLIAKIAV KRGIQNTNNK
501: LMADEVKTLT GGVLLLRNKY YIVIYRGKDF LPSSVAATLA ERQELTKEIQ DVEERVRNRE IEAVQPVGDK VPAEAGTLAE FYEAQARWGK EITPDHREKM
601: IEEASRVANA RVVKRIQHKL NLAQSKFQRA EKLLSKIEAS MIPNGPDYDQ EVISEEERAM FRKVGLKMKA YLPIGIRGVF DGVIENMHLH WKHRELVKLI
701: SKQKNQAFVE ETARLLEYES GGVLVAIEKV PKGFALIYYR GKNYRRPISL RPRNLLTKAK ALKRSIAMQR HEALSQHISE LERTIEQMQS QLTSKNPSYS
801: ESEWENDEDD DDDEEEEKDD VEDNESDWDE TDGESAISSI EEADMSSR
Arabidopsis Description
EMB1865CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9LS51]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.