Factsheet for HORVU1Hr1G019580.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G108800.1	Wheat	mitochondrion	90.38	84.75
TraesCS1D01G090300.1	Wheat	mitochondrion	90.21	84.73
TraesCS1B01G108100.1	Wheat	mitochondrion	90.21	84.59
Os05t0145300-01	Rice	mitochondrion	69.23	70.71
Zm00001d024823_P001	Maize	mitochondrion	71.68	62.69
Zm00001d010884_P001	Maize	mitochondrion	69.76	61.86
EES17695	Sorghum	plastid	73.95	61.75
CDY66660	Canola	plastid	45.63	57.74
Bra033017.1-P	Field mustard	plastid	48.25	57.26
CDY13722	Canola	mitochondrion, nucleus, plastid	48.78	55.8
CDX83707	Canola	mitochondrion, nucleus, plastid	48.95	55.56
Bra025285.1-P	Field mustard	plastid	51.22	55.18
AT3G27550.2	Thale cress	mitochondrion	51.4	53.75
GSMUA_Achr9P19780_001	Banana	nucleus	51.4	51.94
PGSC0003DMT400015748	Potato	nucleus, plastid	47.03	50.47
Solyc07g047900.2.1	Tomato	mitochondrion, nucleus	47.9	47.82
KRG93197	Soybean	mitochondrion	52.8	46.25
KRH56532	Soybean	mitochondrion	52.62	46.09
CDY03983	Canola	cytosol	45.98	35.93
VIT_14s0066g00360.t01	Wine grape	nucleus	52.45	28.12
HORVU3Hr1G110360.1	Barley	mitochondrion	16.08	23.0
HORVU2Hr1G084980.4	Barley	plastid	17.83	18.15
HORVU1Hr1G083550.4	Barley	plasma membrane	13.81	10.19
HORVU7Hr1G052190.1	Barley	plastid	12.59	8.12
HORVU2Hr1G081140.2	Barley	plastid	13.81	7.26
HORVU5Hr1G057460.1	Barley	nucleus, plastid	12.06	6.88
HORVU1Hr1G001270.1	Barley	cytosol, nucleus	0.35	1.64

Protein Annotations

MapMan:35.1	UniProt:A0A287ETI9	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	EnsemblPlantsGene:HORVU1Hr1G019580	EnsemblPlants:HORVU1Hr1G019580.2	InterPro:IPR001890	InterPro:IPR035920	PFAM:PF01985
PFscan:PS51295	PANTHER:PTHR31426	PANTHER:PTHR31426:SF4	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471
UniParc:UPI000B4850CA	InterPro:YhbY_like_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:73929618..73934121

Molecular Weight (calculated)

65814.8 Da

IEP (calculated)

6.535

GRAVY (calculated)

-1.288

Length

572 amino acids

Sequence
(BLAST)

001: PAGGGGGGVC RRLMSTSKGR SMRSKVEKRM GRETGRTQTE LRRAVKLRKK LMTEDERLIH SMRRAKKKVA LLLQKLKKYE LPDLPAPRHD PELLTAEQLQ
101: AYKKIGFRNR NYVPVGVRGV FGGVVQNMHM HWKFHETVQV CCDNFPKEKI KEMASMLTRL SGGIVVNIHN TKTIIMFRGR NYRQPKNLIP FNTLTKRKAL
201: FKARYEQALE SQKLNIKKIE TQLRRKGINP EDPVAMASIQ RVASTFFRAI DEQQGTPYVF HGDNQPATGT TELKEPHEEP AEDSDQEELD NFIAEIEDAA
301: EKQWEEEEAA EKEETSRLQY RYREEMMGER RGFNRSYDNS DADDRTQGRY RRDNDNNKWT KDTRRWDDDS EVEASGEDVD ERRGFGRGHN NSDAEDISPG
401: RSRRENKNNR KTTGSRRLDD DTEASGEDWD SDDGRDSIAG FNKERHVPDE HPRQFESTRH ERSSSSHRQN YMPGASRSPS RTPKKNAVSV SDVSEDDVSD
501: SEDDEVWGSD YKEETNSVWG ADYKEETSPS APKVNFPNYK SSSEEEDAGD NWMHGGRTGQ TKKNTDEDWD SD

Best Arabidopsis Sequence Match ( AT3G27550.1 )
(BLAST)

001: MNQVFKGWSR GMSTSRGRSM RSKVESRMRK ESGKTLREIR RAKKLKKKLM TDEERLIYNL KRAKKKVALL LQKLKKYDLP ELPSPVHDPE LFTSEQVQAF
101: KKIGFKNKNY VPVGVRGVFG GVVQNMHMHW KFHETVQVCC DNFPKEKIKE MASMIARLSG GVVINIHNVK TIIMFRGRNY RQPKNLIPVN TLTKRKALFK
201: ARFEQALESQ KLNIKKTEQQ LRRMGVNPED PVAMASIHRV ASTFFNAIDK KEGTPYVFHG DKQSERGTSV DNREESEPGD EDSDQEELDR FIAEIEEAAD
301: KEWEEEEAAE QEESGRIRYW NREEFAGRSR TPELRSYGDA SHGFRRNDRD THSQRRPNDS DDDDDDGELD SEDDEIPKRF DRARSSNTNT RRPREDFKRR
401: SPDPRPRPRA QVRSDDDVLS DLDNTMWDSE DEEDAPPANY ISSSDDDEDE NRTVSASSSK QSRFRNNSSR DGINNSKSKS GKQRDEDWDS D

Arabidopsis Description

RNA-binding CRS1 / YhbY (CRM) domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS8]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.