Factsheet for Bra033017.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66660	Canola	plastid	90.04	96.02
Bra025285.1-P	Field mustard	plastid	86.51	78.53
AT3G27550.2	Thale cress	mitochondrion	86.31	76.05
PGSC0003DMT400015748	Potato	nucleus, plastid	59.96	54.22
Solyc07g047900.2.1	Tomato	mitochondrion, nucleus	61.41	51.66
Os05t0145300-01	Rice	mitochondrion	58.51	50.36
GSMUA_Achr9P19780_001	Banana	nucleus	59.13	50.35
KRH56532	Soybean	mitochondrion	67.84	50.08
KRG93197	Soybean	mitochondrion	66.81	49.31
HORVU1Hr1G019580.2	Barley	plastid	57.26	48.25
TraesCS1A01G108800.1	Wheat	mitochondrion	59.75	47.21
TraesCS1B01G108100.1	Wheat	mitochondrion	59.34	46.89
TraesCS1D01G090300.1	Wheat	mitochondrion	58.92	46.63
Zm00001d010884_P001	Maize	mitochondrion	59.13	44.19
Zm00001d024823_P001	Maize	mitochondrion	57.68	42.51
EES17695	Sorghum	plastid	60.17	42.34
Bra011945.1-P	Field mustard	mitochondrion	15.35	38.34
Bra034894.1-P	Field mustard	mitochondrion	21.16	31.58
VIT_14s0066g00360.t01	Wine grape	nucleus	64.52	29.15
Bra000492.1-P	Field mustard	mitochondrion	20.95	28.53
Bra015127.1-P	Field mustard	plastid	22.82	25.29
Bra022317.1-P	Field mustard	cytosol, endoplasmic reticulum	7.47	23.68
Bra024130.1-P	Field mustard	cytosol	15.56	11.7
Bra033883.1-P	Field mustard	mitochondrion	18.05	10.05
Bra001704.1-P	Field mustard	plastid	17.22	9.88
Bra037586.1-P	Field mustard	plastid	15.98	9.42
Bra036865.1-P	Field mustard	plastid	15.56	8.72
Bra039123.1-P	Field mustard	plastid	16.39	7.97
Bra036994.1-P	Field mustard	nucleus	11.41	7.42
Bra023555.1-P	Field mustard	golgi	13.49	5.91
Bra024132.1-P	Field mustard	cytosol, plasma membrane, plastid	0.62	3.03

Protein Annotations

MapMan:35.1	EnsemblPlantsGene:Bra033017	EnsemblPlants:Bra033017.1	EnsemblPlants:Bra033017.1-P	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	UniProt:M4EW34
PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31426	PANTHER:PTHR31426:SF4	InterPro:RNA-binding_CRM	SMART:SM01103
SUPFAM:SSF75471	UniParc:UPI0002547213	InterPro:YhbY_like_sf	SEG:seg	:	:

Description

AT3G27550 (E=1e-145) | group II intron splicing factor CRS1-related

Coordinates

chrA02:+:21880610..21883077

Molecular Weight (calculated)

55363.6 Da

IEP (calculated)

8.961

GRAVY (calculated)

-1.040

Length

482 amino acids

Sequence
(BLAST)

001: MFATGNLSRT CRRSLSSLLH SDSSRNLLLS SNHATSNVMV HPSISSEGNS NSFQPLTHQV FKKWSRAMST SRGRSMRSKV ESRMRKESGK TLREIRRAKK
101: LKKKLMTDEE RLIYNLKRAK KKVALLLQKL KKYDLPELPS PVHDPELFTP EQIQAFKKIG FKSKNYVPVG VRGVFGGVVQ NMHMHWNFHE TVHVCCDNFP
201: KEKIKEMATM IARLSGGVVI NIHNVKTIIM YRGRNYRQPK NLIPVNTLTK RKALFKARFE QALESQKLNI KKTEQQLRRM GVNPEDPVAM ASIQRVASTF
301: FNAIDKKEGS PYVFHGDKQS ERGASVVNTE GSEPADEEDS DQEELDRFIA EIEEAADKEW EEEEAAEQEE TGRIRYWNRE EFAGRSRDSS QGFRRNERDT
401: RSQRRSHHSD DEDDDDSDQL DRDEEDAPAN YISSSDEDED ENRGVSASTQ PRFSNNNSSR EGTINNSKTK SGKHKDEDWD SD

Best Arabidopsis Sequence Match ( AT3G27550.2 )
(BLAST)

001: MFVSRSLSRH CWRTCKWSLF SLLQSDSCVR NLVSSSNPVT SIGNSSEGNS NSFQPLMNQV FKGWSRGMST SRGRSMRSKV ESRMRKESGK TLREIRRAKK
101: LKKKLMTDEE RLIYNLKRAK KKVALLLQKL KKYDLPELPS PVHDPELFTS EQVQAFKKIG FKNKNYVPVG VRGVFGGVVQ NMHMHWKFHE TVQVCCDNFP
201: KEKIKEMASM IARLSGGVVI NIHNVKTIIM FRGRNYRQPK NLIPVNTLTK RKALFKARFE QALESQKLNI KKTEQQLRRM GVNPEDPVAM ASIHRVASTF
301: FNAIDKKEGT PYVFHGDKQS ERGTSVDNRE ESEPGDEDSD QEELDRFIAE IEEAADKEWE EEEAAEQEES GRIRYWNREE FAGRSRTPEL RSYGDASHGF
401: RRNDRDTHSQ RRPNDSDDDD DDGELDSEDD EIPKRFDRAR SSNTNTRRPR EDFKRRSPDP RPRPRAQVRS DDDVLSDLDN TMWDSEDEED APPANYISSS
501: DDDEDENRTV SASSSKQSRF RNNSSRDGIN NSKSKSGKQR DEDWDSD

Arabidopsis Description

RNA-binding CRS1 / YhbY (CRM) domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.