Factsheet for TraesCS1B01G108100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G090300.1	Wheat	mitochondrion	96.56	96.72
TraesCS1A01G108800.1	Wheat	mitochondrion	96.07	96.07
HORVU1Hr1G019580.2	Barley	plastid	84.59	90.21
Os05t0145300-01	Rice	mitochondrion	68.69	74.82
Zm00001d010884_P001	Maize	mitochondrion	68.2	64.5
Zm00001d024823_P001	Maize	mitochondrion	69.02	64.37
EES17695	Sorghum	plastid	71.8	63.94
CDY66660	Canola	plastid	44.43	59.96
Bra033017.1-P	Field mustard	plastid	46.89	59.34
CDY13722	Canola	mitochondrion, nucleus, plastid	46.72	57.0
CDX83707	Canola	mitochondrion, nucleus, plastid	46.89	56.75
Bra025285.1-P	Field mustard	plastid	49.02	56.31
AT3G27550.2	Thale cress	mitochondrion	49.18	54.84
GSMUA_Achr9P19780_001	Banana	nucleus	48.03	51.77
PGSC0003DMT400015748	Potato	nucleus, plastid	44.43	50.84
Solyc07g047900.2.1	Tomato	mitochondrion, nucleus	45.9	48.87
KRH56532	Soybean	mitochondrion	50.49	47.17
KRG93197	Soybean	mitochondrion	50.16	46.86
CDY03983	Canola	cytosol	44.59	37.16
TraesCS7B01G128100.1	Wheat	mitochondrion	16.89	30.56
VIT_14s0066g00360.t01	Wine grape	nucleus	49.02	28.02
TraesCS3B01G562100.1	Wheat	mitochondrion	16.07	24.75
TraesCS2B01G367400.1	Wheat	mitochondrion	17.05	21.62
TraesCS1B01G396800.2	Wheat	plastid	13.61	10.48
TraesCS4B01G161000.1	Wheat	plastid	12.95	9.26
TraesCS2B01G346500.1	Wheat	plastid	14.43	8.11
TraesCS7B01G481800.1	Wheat	cytosol, plastid	9.51	7.96
TraesCS5B01G190100.1	Wheat	plastid	12.46	7.81

Protein Annotations

EnsemblPlants:TraesCS1B01G108100.1	EnsemblPlantsGene:TraesCS1B01G108100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf	ncoils:Coil	PANTHER:PTHR31426
PANTHER:PTHR31426:SF4	PFAM:PF01985	PFscan:PS51295	SEG:seg	SMART:SM01103	SUPFAM:SSF75471
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:120395933..120399268

Molecular Weight (calculated)

69821.0 Da

IEP (calculated)

8.010

GRAVY (calculated)

-1.144

Length

610 amino acids

Sequence
(BLAST)

001: MWALRSLRRT LPKAASSSLH RRCAPSINSE GFTARGGGGE AAAASISAAS VPASAGGGGV CRRLMSTSKG RSMRSKVEKR MGRETGRTQM ELRRAVKLRK
101: KLMTEDERLI HSMRRAKKKV ALLLQKLKKY ELPDLPAPRH DPELLTAEQL QAYKKIGFRN RNYVPVGVRG VFGGVVQNMH MHWKFHETVQ VCCDNFPKEK
201: IKEMASMLTR LSGGIVVNIH NTKTIIMFRG RNYRQPKNLI PFNTLTKRKA LFKARYEQAL ESQKLNIKKI ETQLRRKGIN PEDPVAMASI QRVASRFFQA
301: IDEQQGTPYV FHGDKQPTAG TTELKEADVE LAEDSDQEEL DNFIAEIENA AEKQWEEEEA AEKEETSRLQ YRYREEMMGE RRGFNRSYDN SDADDRTQGR
401: YRRDNDNNKW ATDTRRWDDD SEIEASGEDV GERRGFGRSY DNSDAEDRSQ GRYMRENKNN RRTTGSSRLD DDTEASGEDW DTDDGRDSMV VFDKERHVPD
501: EHPRRFDNMR HARSSSRHRQ NYMPGASRSP SRTPKNAVSV SDDSEDDVSD SEDDEVWGAD YKEETSSSAP KVNFPNYKSS SEEEDTGDNW MRGGRTSQTK
601: KNTDEDWDSD

Best Arabidopsis Sequence Match ( AT3G27550.1 )
(BLAST)

001: MNQVFKGWSR GMSTSRGRSM RSKVESRMRK ESGKTLREIR RAKKLKKKLM TDEERLIYNL KRAKKKVALL LQKLKKYDLP ELPSPVHDPE LFTSEQVQAF
101: KKIGFKNKNY VPVGVRGVFG GVVQNMHMHW KFHETVQVCC DNFPKEKIKE MASMIARLSG GVVINIHNVK TIIMFRGRNY RQPKNLIPVN TLTKRKALFK
201: ARFEQALESQ KLNIKKTEQQ LRRMGVNPED PVAMASIHRV ASTFFNAIDK KEGTPYVFHG DKQSERGTSV DNREESEPGD EDSDQEELDR FIAEIEEAAD
301: KEWEEEEAAE QEESGRIRYW NREEFAGRSR TPELRSYGDA SHGFRRNDRD THSQRRPNDS DDDDDDGELD SEDDEIPKRF DRARSSNTNT RRPREDFKRR
401: SPDPRPRPRA QVRSDDDVLS DLDNTMWDSE DEEDAPPANY ISSSDDDEDE NRTVSASSSK QSRFRNNSSR DGINNSKSKS GKQRDEDWDS D

Arabidopsis Description

RNA-binding CRS1 / YhbY (CRM) domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.