Factsheet for Zm00001d010884_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 29575040

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024823_P001	Maize	mitochondrion	87.44	86.24
EES17695	Sorghum	plastid	90.23	84.96
Os05t0145300-01	Rice	mitochondrion	65.58	75.54
HORVU1Hr1G019580.2	Barley	plastid	61.86	69.76
TraesCS1D01G090300.1	Wheat	mitochondrion	64.81	68.64
TraesCS1B01G108100.1	Wheat	mitochondrion	64.5	68.2
TraesCS1A01G108800.1	Wheat	mitochondrion	64.19	67.87
CDY66660	Canola	plastid	42.02	59.96
Bra033017.1-P	Field mustard	plastid	44.19	59.13
CDY13722	Canola	mitochondrion, nucleus, plastid	44.19	57.0
CDX83707	Canola	mitochondrion, nucleus, plastid	44.34	56.75
Bra025285.1-P	Field mustard	plastid	45.74	55.56
AT3G27550.2	Thale cress	mitochondrion	46.36	54.66
GSMUA_Achr9P19780_001	Banana	nucleus	46.05	52.47
PGSC0003DMT400015748	Potato	nucleus, plastid	42.79	51.78
Solyc07g047900.2.1	Tomato	mitochondrion, nucleus	43.41	48.87
KRH56532	Soybean	mitochondrion	47.29	46.71
KRG93197	Soybean	mitochondrion	46.36	45.79
CDY03983	Canola	cytosol	42.48	37.43
Zm00001d025706_P002	Maize	mitochondrion	15.04	28.7
VIT_14s0066g00360.t01	Wine grape	nucleus	46.67	28.21
Zm00001d042043_P001	Maize	mitochondrion	13.8	22.59
Zm00001d003196_P001	Maize	mitochondrion	16.59	22.06
Zm00001d038922_P001	Maize	extracellular	12.09	9.81
Zm00001d007572_P001	Maize	plastid	12.71	9.74
Zm00001d020230_P006	Maize	plastid	11.94	7.99
Zm00001d032373_P004	Maize	plastid	9.15	7.59
Zm00001d025629_P007	Maize	plastid	11.63	7.22
Zm00001d025633_P007	Maize	plastid	11.63	7.22

Protein Annotations

EnsemblPlants:Zm00001d010884_P001	EnsemblPlants:Zm00001d010884_T001	EnsemblPlantsGene:Zm00001d010884	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf	ncoils:Coil
PANTHER:PTHR31426	PANTHER:PTHR31426:SF4	PFAM:PF01985	PFscan:PS51295	ProteinID:AQK95171.1	SEG:seg
SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0002219B3E	UniProt:K7UXR7	MapMan:35.1	:

Description

CRM-domain containing factor CFM3A chloroplastic/mitochondrial

Coordinates

chr8:-:132112713..132116755

Molecular Weight (calculated)

73650.2 Da

IEP (calculated)

9.073

GRAVY (calculated)

-1.139

Length

645 amino acids

Sequence
(BLAST)

001: MWSLLRAASP LLRRSSGRLA ARGEAVAAAS ASAPAPAGLL AVGAGAYSRW RRAMSTKGRS MRSKVEKRMA RETGRTQREL RRAVKLRKKL MTEDEKLIYN
101: LRRAKKKVAL LLQKLKKYEL PDLPAPRHDP ELLTAEQLQA YKKIGFRNRN YVPVGVRGVF GGVVQNMHMH WKFHETVQVC CDNFPKEKIK EMAAMLTRLS
201: GGIVINIHNT KTIIMFRGRN YRQPKNLIPF NTLTKRKALF KARFEQALES QKLNIKKIET QLRRKGINPE DPVAMASIQR VASTFFRAID EQQGTPYIFR
301: GDTQPSAGTS EIKEPRDEPS EDSDQEELDR FISEIESAAE KQWEEEEAAE KEESSRMRYW EREDVGDRRG FNRNNENSDY EDRGHGRYRI EHNNNRRTSD
401: VRKWDDDSEF EASGEEWDSG DDRGNAPGFD SDRDSIDEHP RRFGSMRNEK SRSSWTQDFV PTRDVGEGKV FNRSYANSDV YDRGQGRHRI DNNSSKRASD
501: ARRWDDSEIE ASGEEWDTGV DSDNDLEDAT DGHPRQFKSM RNEKSRSRGR QNSIPGGFRG SNRITGNSAD ASDGAMFRCS NGDELGTEDE DLSVSDYRGE
601: ATNSRSPKVN FPNFHSGSED SDENRKNDGK VGKTNKNTDE SWDSD

Best Arabidopsis Sequence Match ( AT3G27550.2 )
(BLAST)

001: MFVSRSLSRH CWRTCKWSLF SLLQSDSCVR NLVSSSNPVT SIGNSSEGNS NSFQPLMNQV FKGWSRGMST SRGRSMRSKV ESRMRKESGK TLREIRRAKK
101: LKKKLMTDEE RLIYNLKRAK KKVALLLQKL KKYDLPELPS PVHDPELFTS EQVQAFKKIG FKNKNYVPVG VRGVFGGVVQ NMHMHWKFHE TVQVCCDNFP
201: KEKIKEMASM IARLSGGVVI NIHNVKTIIM FRGRNYRQPK NLIPVNTLTK RKALFKARFE QALESQKLNI KKTEQQLRRM GVNPEDPVAM ASIHRVASTF
301: FNAIDKKEGT PYVFHGDKQS ERGTSVDNRE ESEPGDEDSD QEELDRFIAE IEEAADKEWE EEEAAEQEES GRIRYWNREE FAGRSRTPEL RSYGDASHGF
401: RRNDRDTHSQ RRPNDSDDDD DDGELDSEDD EIPKRFDRAR SSNTNTRRPR EDFKRRSPDP RPRPRAQVRS DDDVLSDLDN TMWDSEDEED APPANYISSS
501: DDDEDENRTV SASSSKQSRF RNNSSRDGIN NSKSKSGKQR DEDWDSD

Arabidopsis Description

RNA-binding CRS1 / YhbY (CRM) domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.