Factsheet for Zm00001d020230_P006

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, vacuole
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	vacuole

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96635	Sorghum	plastid	89.0	89.19
GSMUA_Achr8P05570_001	Banana	cytosol	24.59	68.9
Os09t0363100-01	Rice	plastid	67.12	68.32
TraesCS5B01G190100.1	Wheat	plastid	68.05	67.42
TraesCS5A01G194600.1	Wheat	plastid	67.84	67.21
TraesCS5D01G197600.1	Wheat	plastid	62.03	66.15
HORVU5Hr1G057460.1	Barley	nucleus, plastid	68.05	65.4
Bra024130.1-P	Field mustard	cytosol	35.27	53.04
CDY30199	Canola	cytosol	35.06	52.73
Bra024132.1-P	Field mustard	cytosol, plasma membrane, plastid	5.19	50.51
Solyc07g039500.2.1	Tomato	plastid	39.83	47.29
VIT_11s0016g02100.t01	Wine grape	plastid	43.36	47.29
PGSC0003DMT400056675	Potato	cytosol, plastid	40.04	47.19
KRH02705	Soybean	plastid	38.49	46.73
CDY46704	Canola	plastid	37.76	46.49
AT4G29750.1	Thale cress	plastid	37.45	42.93
Zm00001d007572_P001	Maize	plastid	34.02	38.95
Zm00001d038922_P001	Maize	extracellular	29.36	35.6
Zm00001d032373_P004	Maize	plastid	22.93	28.44
Zm00001d025706_P002	Maize	mitochondrion	8.4	23.96
Zm00001d025629_P007	Maize	plastid	24.48	22.71
Zm00001d025633_P007	Maize	plastid	24.48	22.71
Zm00001d042043_P001	Maize	mitochondrion	8.09	19.8
Zm00001d003196_P001	Maize	mitochondrion	8.82	17.53
Zm00001d010884_P001	Maize	mitochondrion	7.99	11.94
Zm00001d024823_P001	Maize	mitochondrion	7.88	11.62

Protein Annotations

EntrezGene:103632644	Gene3D:3.30.110.60	MapMan:35.1	UniProt:A0A1D6I348	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	ProteinID:ONM54580.1
PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF7	InterPro:RNA-binding_CRM	SMART:SM01103
SUPFAM:SSF75471	UniParc:UPI00022092F9	InterPro:YhbY_like_sf	EnsemblPlantsGene:Zm00001d020230	EnsemblPlants:Zm00001d020230_P006	EnsemblPlants:Zm00001d020230_T006
SEG:seg	:	:	:	:	:

Description

CRS1 / YhbY (CRM) domain-containing protein

Coordinates

chr7:+:101295422..101299977

Molecular Weight (calculated)

107554.0 Da

IEP (calculated)

6.871

GRAVY (calculated)

-0.638

Length

964 amino acids

Sequence
(BLAST)

001: MALLLPPPAL STTPPFLSAP RPARLPCLRC TRTTTATSSV STCPPASTSS PSTSSPVASD GAVGRKSKNK SRPLKPSFEE QALRRWSARA PSQRASVPWE
101: QPQQQSPLPP SLPHRAGRGS GDAGDQKRSG GGSSATLRSI VDYFAGGSSD DEGVRVEEGA CDTTAVPDQA AREQDDGSHF RPSYLLGSHP FSAPWIHREE
201: STNDRGVSGP VAEEEERLDI RDASDDELGL VDEDKEETDN GEELLTGGLE DEFYDDYATP TMNSSYGVDL SVDKDAYGSR FDRSMMQSSV NTIVKTLRNS
301: MEESDPNATV ELSNAEDFVQ KLGPALLPWE REEEDDEAFS GGRAVRRSNT ELAERSIPEP ELRRLRDTAL RMKERIKVGP GGVTQDIVES IHRKWKVDEV
401: VKMRFEGPPS LNMKRTHDLL EDRTGGVVIW RSGRSVVLYR GMNYNFQCVQ SYAKFIEIDS GKGVSDANSA VLSHDGHNLQ ASRADGMKSL TSTGNFSLES
501: SETFDIDNFL DQLGPRYKDW SGRGPIPVDA DLLPGVVHGY KPPFRVLPYK IKSTLRDKEM TTLRRLARQT APHFALGRNR EHQGLAAAMV KLWEKSAIAK
601: IAIKRGIPNT CNDRMAEEIK KLTGGVLLSR NKEFIVFYRG NDFIAPKVRQ VLVEKQEQAI TQQDEEELAR LKASASIITI PKDIKGPLVA GTLAETTEAK
701: SRWGKSVNDK QREEEMKHLS LLKHTSLLKN LKRKLILAKT KVAKAEKALA KVQEFLTPAE LPTDLETVTD EERFLFRRIG LKMRAFLMLG RREVFDGTVQ
801: NMHLHWKHRE LVKIVVRGKS FAQAKHIAIS LEAESEGVLI SLDKTTKGYV IIFYRGKNYR RPQIMKPRNL LTRRQALARS IELQRREALK HHISSLQGKI
901: SKLQSQLVQT KVASEKHDLK LLQTVEDDFS SSDDDVEDDG EEAYLQTYSS ADEEDAEDDA NEYI

Best Arabidopsis Sequence Match ( AT4G29750.1 )
(BLAST)

001: MALCQFPLNL HTISSSTSSS PRFRRLQPLD TSTKPNFLIR RLRFHSFNHP VRFHTRELSV ITATIDIDTH QRKKTKRKPK PGFFEEISDK WSSRISPKTE
101: KLPWQKQEEQ IQHHEDEEDE EGDESSSNLS SGNGLSDKRT DSNRLYSANE PWSFPRPSGY MSAPWVNNGG SKGVNFTTSS EQGIQSSSFH DVTTVDRYRR
201: DNDSSDRAVD SDLDDGERGM IDSGNNKGIW RTRKSNTVEA ERIVPEHELK RLRNVALRMV ERVKVGSAGI TQALVEAIHE KWEVDEVVKL KFSEPYSLNM
301: KRTHEVLEKK TGGLVIWRSG SSVVLYRGIS YKLKCVQTFI KQNNLEANPE IHRSVEARDY VQEDGNYPKN VPKEQLSELC ELNDLLDEVG PRFHDWTGCA
401: PFPVDADLLP GYVEGYRCPF RILPQGVKPC LSNTEMTEMR RLARTSPPHF ALGRSRELQG LAKAMVKLWA KSAIAKIAIK RGVENTRNER MAEELKRLTR
501: GVLVSRNKEY IVFYRGNDFM PPAVAEALTE RQKEITEVLQ AKEDQAREMA STRATLTSQA KSPKTQLLAG TLAETIAASS RWAPNASSVD IEELKRESAS
601: IKRAALIRDL ELRLLYGKQK LRRAERDLAK VQKDLDPSEL PTDSEIITEE ERLLYRKIGL SMDPFLLLGR REVYDGTIEN MHLHWKHREL VKVIVRGKSL
701: PQVKHIAISL EAESGGVLVS VDKTMKGYAI ILYRGKNYQM PFRLRPSNLL TRKKAFARSI ELQRREALKY HVADLEERIE LLKTGQDDDM ETRNKSDEEE
801: ENLYLRVDES DFSSDEDESL EWESEKNETF LSSEGKEEEE A

Arabidopsis Description

CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JNR2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.