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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra024130.1-P Field mustard cytosol 64.8 85.02
CDY30199 Canola cytosol 64.57 84.71
CDY46704 Canola plastid 75.39 80.97
Bra024132.1-P Field mustard cytosol, plasma membrane, plastid 9.16 77.78
GSMUA_Achr8P05570_001 Banana cytosol 22.12 54.07
VIT_11s0016g02100.t01 Wine grape plastid 51.01 48.53
KRH02705 Soybean plastid 45.54 48.24
PGSC0003DMT400056675 Potato cytosol, plastid 44.71 45.97
Solyc07g039500.2.1 Tomato plastid 44.35 45.94
Os09t0363100-01 Rice plastid 44.23 39.28
EER96635 Sorghum plastid 44.23 38.67
TraesCS5A01G194600.1 Wheat plastid 43.64 37.72
Zm00001d020230_P006 Maize plastid 42.93 37.45
TraesCS5B01G190100.1 Wheat plastid 43.28 37.41
HORVU5Hr1G057460.1 Barley nucleus, plastid 43.04 36.09
TraesCS5D01G197600.1 Wheat plastid 38.29 35.62
AT3G23070.1 Thale cress plastid 35.32 33.71
AT4G14510.1 Thale cress plastid 35.79 33.19
AT3G18390.1 Thale cress plastid 30.92 30.66
AT5G16180.1 Thale cress endoplasmic reticulum 26.16 30.56
AT3G01370.1 Thale cress plastid 30.92 25.72
AT4G13070.1 Thale cress mitochondrion 8.68 21.28
AT2G28480.1 Thale cress mitochondrion 9.39 21.24
AT3G25440.1 Thale cress plastid 10.23 19.37
AT3G27550.2 Thale cress mitochondrion 8.56 13.16
Protein Annotations
Gene3D:3.30.110.60MapMan:35.1EntrezGene:829097ProteinID:AEE85671.1ArrayExpress:AT4G29750EnsemblPlantsGene:AT4G29750
RefSeq:AT4G29750TAIR:AT4G29750RefSeq:AT4G29750-TAIR-GEnsemblPlants:AT4G29750.1TAIR:AT4G29750.1Unigene:At.31891
ncoils:CoilUniProt:F4JNR2GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488
InterPro:IPR001890InterPro:IPR035920RefSeq:NP_194704.2PFAM:PF01985PO:PO:0000013PO:PO:0000037
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PFscan:PS51295PANTHER:PTHR31846
PANTHER:PTHR31846:SF7InterPro:RNA-binding_CRMSMART:SM01103SUPFAM:SSF75471UniParc:UPI0001E92F10InterPro:YhbY_like_sf
SEG:seg:::::
Description
CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JNR2]
Coordinates
chr4:+:14569665..14573177
Molecular Weight (calculated)
96339.0 Da
IEP (calculated)
7.335
GRAVY (calculated)
-0.743
Length
841 amino acids
Sequence
(BLAST)
001: MALCQFPLNL HTISSSTSSS PRFRRLQPLD TSTKPNFLIR RLRFHSFNHP VRFHTRELSV ITATIDIDTH QRKKTKRKPK PGFFEEISDK WSSRISPKTE
101: KLPWQKQEEQ IQHHEDEEDE EGDESSSNLS SGNGLSDKRT DSNRLYSANE PWSFPRPSGY MSAPWVNNGG SKGVNFTTSS EQGIQSSSFH DVTTVDRYRR
201: DNDSSDRAVD SDLDDGERGM IDSGNNKGIW RTRKSNTVEA ERIVPEHELK RLRNVALRMV ERVKVGSAGI TQALVEAIHE KWEVDEVVKL KFSEPYSLNM
301: KRTHEVLEKK TGGLVIWRSG SSVVLYRGIS YKLKCVQTFI KQNNLEANPE IHRSVEARDY VQEDGNYPKN VPKEQLSELC ELNDLLDEVG PRFHDWTGCA
401: PFPVDADLLP GYVEGYRCPF RILPQGVKPC LSNTEMTEMR RLARTSPPHF ALGRSRELQG LAKAMVKLWA KSAIAKIAIK RGVENTRNER MAEELKRLTR
501: GVLVSRNKEY IVFYRGNDFM PPAVAEALTE RQKEITEVLQ AKEDQAREMA STRATLTSQA KSPKTQLLAG TLAETIAASS RWAPNASSVD IEELKRESAS
601: IKRAALIRDL ELRLLYGKQK LRRAERDLAK VQKDLDPSEL PTDSEIITEE ERLLYRKIGL SMDPFLLLGR REVYDGTIEN MHLHWKHREL VKVIVRGKSL
701: PQVKHIAISL EAESGGVLVS VDKTMKGYAI ILYRGKNYQM PFRLRPSNLL TRKKAFARSI ELQRREALKY HVADLEERIE LLKTGQDDDM ETRNKSDEEE
801: ENLYLRVDES DFSSDEDESL EWESEKNETF LSSEGKEEEE A
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.