Factsheet for AT2G28480.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000492.1-P	Field mustard	mitochondrion	81.45	85.59
CDX83289	Canola	mitochondrion	84.41	84.41
CDY31205	Canola	mitochondrion	83.87	83.87
Bra011945.1-P	Field mustard	mitochondrion	43.28	83.42
Solyc09g005270.2.1	Tomato	mitochondrion	61.83	62.84
PGSC0003DMT400030768	Potato	mitochondrion	61.83	62.5
CDY15751	Canola	mitochondrion, plastid, vacuole	55.65	59.65
KRH29618	Soybean	nucleus	45.16	59.15
VIT_05s0102g00700.t01	Wine grape	plastid	63.17	56.49
PGSC0003DMT400039655	Potato	mitochondrion, plastid	59.14	55.56
KRH24621	Soybean	mitochondrion	60.48	52.69
Solyc12g014280.1.1	Tomato	mitochondrion, plastid	58.33	52.54
TraesCS3D01G505800.1	Wheat	mitochondrion	53.23	50.38
TraesCS3B01G562100.1	Wheat	mitochondrion	53.23	50.0
HORVU3Hr1G110360.1	Barley	mitochondrion	53.23	49.5
Zm00001d042043_P001	Maize	mitochondrion	52.15	49.24
EES02081	Sorghum	mitochondrion	53.23	48.89
GSMUA_Achr3P16860_001	Banana	mitochondrion	56.18	46.76
Os01t0958400-02	Rice	mitochondrion	51.34	45.8
TraesCS3A01G499000.2	Wheat	mitochondrion, nucleus	52.69	45.16
AT4G13070.1	Thale cress	mitochondrion	34.14	37.03
AT3G25440.1	Thale cress	plastid	29.57	24.77
AT3G27550.2	Thale cress	mitochondrion	27.69	18.83
AT3G18390.1	Thale cress	plastid	23.12	10.14
AT5G16180.1	Thale cress	endoplasmic reticulum	18.55	9.58
AT4G29750.1	Thale cress	plastid	21.24	9.39
AT3G23070.1	Thale cress	plastid	21.51	9.08
AT3G01370.1	Thale cress	plastid	24.46	9.0
AT4G14510.1	Thale cress	plastid	21.51	8.82

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	EntrezGene:817396	UniProt:A0A178VPY2	ProteinID:AAD21483.1	ProteinID:AEC08129.1
EMBL:AK226713	ArrayExpress:AT2G28480	EnsemblPlantsGene:AT2G28480	RefSeq:AT2G28480	TAIR:AT2G28480	RefSeq:AT2G28480-TAIR-G
EnsemblPlants:AT2G28480.1	TAIR:AT2G28480.1	Unigene:At.50106	EMBL:BT011753	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0008150	InterPro:IPR001890	InterPro:IPR035920
RefSeq:NP_180415.1	ProteinID:OAP07123.1	PFAM:PF01985	PO:PO:0000293	PFscan:PS51295	PANTHER:PTHR31426
PANTHER:PTHR31426:SF2	UniProt:Q9SK10	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI00000A7C7F
InterPro:YhbY_like_sf	SEG:seg	:	:	:	:

Description

At2g28480 [Source:UniProtKB/TrEMBL;Acc:Q9SK10]

Coordinates

chr2:-:12176483..12178498

Molecular Weight (calculated)

42967.2 Da

IEP (calculated)

9.751

GRAVY (calculated)

-0.812

Length

372 amino acids

Sequence
(BLAST)

001: MAIAFARGLR KASSFLRSSY PLLISSRLLP ISQEFYDSTL TFVLPTRPIC RNFSHGYGTV NLVISEGKPK FETRELDPPK KYKWLTKKRL KLKRKKEREE
101: RNAANRKDPR RLTVKGKKKK FVNAEERIKY KLEKAKIKEA LLIERLKRYE VAKVQGPEVR PHEITGEERF YLKKMGQKRS NYVPIGRRGV FGGVILNMHL
201: HWKKHETVKV ICNNSKPGQV QQYAEELAKL SGGVPVNIIG DDTIIFYRGK GYVQPQVMSP IDTLSKKRAY EKSKYEQSLE SVRHFIAIAE KELELYYRHV
301: ALYDDPNNRN PLSILDDSPS ESRQHHENEF FLSCSDTDSS SEDEDEDEEL CELDNGSSSS SSAKEELSES EN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.