Factsheet for TraesCS3B01G562100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G505800.1	Wheat	mitochondrion	96.46	97.2
HORVU3Hr1G110360.1	Barley	mitochondrion	91.67	90.75
TraesCS3A01G499000.2	Wheat	mitochondrion, nucleus	96.97	88.48
Zm00001d042043_P001	Maize	mitochondrion	76.26	76.65
EES02081	Sorghum	mitochondrion	77.53	75.8
Os01t0958400-02	Rice	mitochondrion	76.52	72.66
Bra011945.1-P	Field mustard	mitochondrion	34.09	69.95
Solyc09g005270.2.1	Tomato	mitochondrion	52.53	56.83
KRH29618	Soybean	nucleus	40.66	56.69
Bra000492.1-P	Field mustard	mitochondrion	50.25	56.21
PGSC0003DMT400030768	Potato	mitochondrion	52.02	55.98
CDY31205	Canola	mitochondrion	50.25	53.49
AT2G28480.1	Thale cress	mitochondrion	50.0	53.23
CDX83289	Canola	mitochondrion	50.0	53.23
GSMUA_Achr3P16860_001	Banana	mitochondrion	58.08	51.45
VIT_05s0102g00700.t01	Wine grape	plastid	53.54	50.96
PGSC0003DMT400039655	Potato	mitochondrion, plastid	50.76	50.76
KRH24621	Soybean	mitochondrion	53.03	49.18
Solyc12g014280.1.1	Tomato	mitochondrion, plastid	50.76	48.67
CDY15751	Canola	mitochondrion, plastid, vacuole	36.87	42.07
TraesCS7B01G128100.1	Wheat	mitochondrion	35.61	41.84
TraesCS2B01G367400.1	Wheat	mitochondrion	29.04	23.91
TraesCS1B01G108100.1	Wheat	mitochondrion	24.75	16.07
TraesCS1B01G396800.2	Wheat	plastid	19.7	9.85
TraesCS7B01G481800.1	Wheat	cytosol, plastid	17.93	9.74
TraesCS4B01G161000.1	Wheat	plastid	20.71	9.61
TraesCS2B01G346500.1	Wheat	plastid	20.96	7.65
TraesCS5B01G190100.1	Wheat	plastid	17.93	7.3

Protein Annotations

EnsemblPlants:TraesCS3B01G562100.1	EnsemblPlantsGene:TraesCS3B01G562100	Gene3D:3.30.110.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf	ncoils:Coil
PANTHER:PTHR31426	PANTHER:PTHR31426:SF2	PFAM:PF01985	PFscan:PS51295	SEG:seg	SMART:SM01103
SUPFAM:SSF75471	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:795329725..795334309

Molecular Weight (calculated)

45172.9 Da

IEP (calculated)

9.838

GRAVY (calculated)

-0.825

Length

396 amino acids

Sequence
(BLAST)

001: MATRLLSRQN LRKLAASFTL LNPSQKILLS PPPPAHSYCR SDAISPSKCL SPFYPFMYPR GVRWASYESV NLVLSDDGKP KFEIEEVEPS KKGRFLTKRR
101: LKLQRKREKR KRKEANKNDP RRIRPKGKKI KQKFPTPEAR LKYKIEKSKL KEAMLVEKLK RYEVAKAEGP VAKPDDLDGE ERFYLKKVSQ KKSNYVPIGR
201: RGVFGGVILN MHLHWKKHET VKVICKPCKP GQIQEYANEI ARLSGGVPIN VIGNDTIVFY RGKDYVQPEV MSPIDTLSKK KALEKSKYEQ SLETVRRFIA
301: VSEKELELYY RHVALYGKPQ PQNADLVHGD GSQASSLETE DMNHGKDQAF SDVDIMDTSE SDEEYDSSSE SDANDVATGD ATDSSEDTDV SDHRLF

Best Arabidopsis Sequence Match ( AT2G28480.1 )
(BLAST)

001: MAIAFARGLR KASSFLRSSY PLLISSRLLP ISQEFYDSTL TFVLPTRPIC RNFSHGYGTV NLVISEGKPK FETRELDPPK KYKWLTKKRL KLKRKKEREE
101: RNAANRKDPR RLTVKGKKKK FVNAEERIKY KLEKAKIKEA LLIERLKRYE VAKVQGPEVR PHEITGEERF YLKKMGQKRS NYVPIGRRGV FGGVILNMHL
201: HWKKHETVKV ICNNSKPGQV QQYAEELAKL SGGVPVNIIG DDTIIFYRGK GYVQPQVMSP IDTLSKKRAY EKSKYEQSLE SVRHFIAIAE KELELYYRHV
301: ALYDDPNNRN PLSILDDSPS ESRQHHENEF FLSCSDTDSS SEDEDEDEEL CELDNGSSSS SSAKEELSES EN

Arabidopsis Description

At2g28480 [Source:UniProtKB/TrEMBL;Acc:Q9SK10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.