Factsheet for HORVU3Hr1G110360.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G562100.1	Wheat	mitochondrion	90.75	91.67
TraesCS3D01G505800.1	Wheat	mitochondrion	89.25	90.84
TraesCS3A01G499000.2	Wheat	mitochondrion, nucleus	92.5	85.25
Zm00001d042043_P001	Maize	mitochondrion	75.25	76.4
EES02081	Sorghum	mitochondrion	75.75	74.81
Os01t0958400-02	Rice	mitochondrion	74.0	70.98
Bra011945.1-P	Field mustard	mitochondrion	33.25	68.91
KRH29618	Soybean	nucleus	40.25	56.69
Solyc09g005270.2.1	Tomato	mitochondrion	51.5	56.28
Bra000492.1-P	Field mustard	mitochondrion	49.5	55.93
PGSC0003DMT400030768	Potato	mitochondrion	51.25	55.71
AT2G28480.1	Thale cress	mitochondrion	49.5	53.23
CDY31205	Canola	mitochondrion	49.5	53.23
CDX83289	Canola	mitochondrion	49.25	52.96
GSMUA_Achr3P16860_001	Banana	mitochondrion	57.75	51.68
VIT_05s0102g00700.t01	Wine grape	plastid	53.0	50.96
PGSC0003DMT400039655	Potato	mitochondrion, plastid	49.75	50.25
KRH24621	Soybean	mitochondrion	51.75	48.48
Solyc12g014280.1.1	Tomato	mitochondrion, plastid	49.75	48.18
CDY15751	Canola	mitochondrion, plastid, vacuole	36.0	41.5
HORVU2Hr1G084980.4	Barley	plastid	28.5	20.28
HORVU1Hr1G019580.2	Barley	plastid	23.0	16.08
HORVU1Hr1G083550.4	Barley	plasma membrane	19.25	9.94
HORVU7Hr1G052190.1	Barley	plastid	20.5	9.24
HORVU2Hr1G081140.2	Barley	plastid	20.0	7.35
HORVU5Hr1G057460.1	Barley	nucleus, plastid	17.75	7.08
HORVU1Hr1G001270.1	Barley	cytosol, nucleus	2.0	6.56

Protein Annotations

EnsemblPlants:HORVU3Hr1G110360.1	EnsemblPlantsGene:HORVU3Hr1G110360	Gene3D:3.30.110.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf	ncoils:Coil
PANTHER:PTHR31426	PANTHER:PTHR31426:SF2	PFAM:PF01985	PFscan:PS51295	SEG:seg	SMART:SM01103
SUPFAM:SSF75471	UniParc:UPI00029682AC	UniProt:M0YX12	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr3H:+:681462749..681466736

Molecular Weight (calculated)

45510.3 Da

IEP (calculated)

9.694

GRAVY (calculated)

-0.739

Length

400 amino acids

Sequence
(BLAST)

001: MAIRLLARQN LMKLAASFTL LNPSQKILVS PSHLALGPDA FSASKCFSPF YPFVNSPSVR WASYESVNLV LSDDGKPKFE IEEVEPSKKG RFLTKRRLKL
101: QRKREKRKRK EANKNDPRRI RPKGKKIKQK FPTPEARLKY KIEKSKLKEA MLVEKLKRYE VAKAEGPVAK PDDLDGEERF YLKKVSQKKS NYVPIGRRGV
201: FGGVILNMHL HWKKHETVKV ICKPCKPGQI QEYANEIARL SGGVPINVIG NDSIVFYRGK DYVQPEVMSP IDTLSKKKAL EKSKYEQSLE TVRRFIAVSE
301: KELELYYRHV ALYGKPQHHN ADLVHGDGNQ ASSLEMEELN HGMDQGPHLA RNDFSDVDIM DTSQSDEEYD SSSESDADDV ATGDAVDSSE DTDVSDHRLF

Best Arabidopsis Sequence Match ( AT2G28480.1 )
(BLAST)

001: MAIAFARGLR KASSFLRSSY PLLISSRLLP ISQEFYDSTL TFVLPTRPIC RNFSHGYGTV NLVISEGKPK FETRELDPPK KYKWLTKKRL KLKRKKEREE
101: RNAANRKDPR RLTVKGKKKK FVNAEERIKY KLEKAKIKEA LLIERLKRYE VAKVQGPEVR PHEITGEERF YLKKMGQKRS NYVPIGRRGV FGGVILNMHL
201: HWKKHETVKV ICNNSKPGQV QQYAEELAKL SGGVPVNIIG DDTIIFYRGK GYVQPQVMSP IDTLSKKRAY EKSKYEQSLE SVRHFIAIAE KELELYYRHV
301: ALYDDPNNRN PLSILDDSPS ESRQHHENEF FLSCSDTDSS SEDEDEDEEL CELDNGSSSS SSAKEELSES EN

Arabidopsis Description

At2g28480 [Source:UniProtKB/TrEMBL;Acc:Q9SK10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.