Factsheet for HORVU2Hr1G084980.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G349000.1	Wheat	mitochondrion	79.18	92.32
TraesCS2A01G366200.1	Wheat	mitochondrion	77.94	91.82
TraesCS2B01G367400.1	Wheat	mitochondrion	77.76	90.85
Os04t0492900-03	Rice	mitochondrion	64.95	76.2
TraesCS2D01G347400.2	Wheat	mitochondrion, nucleus, plastid	75.27	73.44
Zm00001d003196_P001	Maize	mitochondrion	63.17	73.2
KXG26557	Sorghum	mitochondrion	64.95	72.71
GSMUA_Achr2P05820_001	Banana	cytosol	39.32	67.58
VIT_12s0035g00830.t01	Wine grape	nucleus	35.77	60.73
KRH69093	Soybean	mitochondrion	41.81	52.57
Bra015127.1-P	Field mustard	plastid	39.32	50.8
CDY27892	Canola	plastid	39.32	50.69
CDY00840	Canola	plastid	39.68	50.45
PGSC0003DMT400071187	Potato	mitochondrion	41.64	50.43
Solyc06g082990.2.1	Tomato	mitochondrion	41.28	50.22
AT3G25440.1	Thale cress	plastid	38.26	48.42
KRH71856	Soybean	nucleus	41.81	45.37
HORVU3Hr1G110360.1	Barley	mitochondrion	20.28	28.5
HORVU1Hr1G019580.2	Barley	plastid	18.15	17.83
HORVU1Hr1G083550.4	Barley	plasma membrane	17.08	12.39
HORVU7Hr1G052190.1	Barley	plastid	16.55	10.48
HORVU5Hr1G057460.1	Barley	nucleus, plastid	16.55	9.27
HORVU2Hr1G081140.2	Barley	plastid	17.62	9.1
HORVU1Hr1G001270.1	Barley	cytosol, nucleus	0.53	2.46

Protein Annotations

EnsemblPlants:HORVU2Hr1G084980.4	EnsemblPlantsGene:HORVU2Hr1G084980	Gene3D:3.30.110.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf	ncoils:Coil
PANTHER:PTHR31426	PANTHER:PTHR31426:SF5	PFAM:PF01985	PFscan:PS51295	SEG:seg	SMART:SM01103
SUPFAM:SSF75471	UniParc:UPI000B487B5E	UniProt:A0A287IQZ4	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr2H:+:614414648..614417818

Molecular Weight (calculated)

63407.8 Da

IEP (calculated)

9.856

GRAVY (calculated)

-0.735

Length

562 amino acids

Sequence
(BLAST)

001: SSSPQDSPAA LSRTLSAHSP SRHSPLTKPV CVPAQRHAGS PPESARALPP RPPELSHPTT RAPALARAIS NSRCTVLRAR MASRLLLLRQ ATRRWRLQPS
101: PPPPPLPSSG GVDATAPSHE TVRLSPPPPL YTFHKVFCQD ARFFSCPRSY NLQTCRSVHT SRPVNSQNQD MAMGPQNPGA IVSVDDCGKP KAKRKKLKGK
201: RAVTRFLKSL RWKKEREFQR MTAEEKILYK LKLARKKEER LLAALKKIEP NDPSEPTHDP EVLTPEEHFY FLKMGQKSKN YVPVGRRGIY QGVILNMHLH
301: WKKHQTLQVI VKTFTPEEVK EIASELAILS GGIVLSIEEG NTIIMYRGKN YAQPPPEIMS PKVALPRKKA LDKSKYRDRL RALRRYIPRL EQELEDLHAQ
401: MKLAGGHIGQ SATKDIAFIS DCTNSISVNN DSSSSVLKRT VSELLSEKIE RSEKLEGENS EVDDDSTSES ITYSESEDLS DMFETDSEEQ AEDSKERPLY
501: LDRLDKFLPE KKDNEPDDFE EHLRKIASLS DKADSPAKEL KISELDEIDK IFLRASSLLK KR

Best Arabidopsis Sequence Match ( AT3G25440.1 )
(BLAST)

001: MGFLTAAIRV STSAASMLLR RKSRQLGFLA SSSPLFSSFN SMNRTISSCN IVCKVLHKES LTRPMWNVSF LRSSSFHSTP ARETGDDDIS KSENSSSQDG
101: DSCTKLKRKK LKGKRAVVRW LKFFRWKKKK EFERMTSEEK ILNKLRKARK KEERLMETMK KLEPSESAET THDPEILTPE EHFYYLKMGL KCKNYVPVGR
201: RGIYQGVILN MHLHWKKHQT LQVVIKTFTP DEVKEIAVEL ARLTGGIVLD VHEGNTIIMY RGKNYVQPPT EIMSPRITLP RKKALDKSKC RDALRAVRKY
301: IPRLEQELQL LQAQAETKRD YTNVKVDDNQ ERSEELKKII ERSEECLEDE QEEDEAGLEL ATDSDLSDIF ETDSELEDAK TERPLFLEEF EKFPAINNRE
401: DEDFGDLGKA KSEGEENDDD KSPNFDEVDK MFLRAAFLLK KKRR

Arabidopsis Description

Uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q67XL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.