Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G346500.1 | Wheat | plastid | 91.08 | 91.34 |
| TraesCS2D01G327400.1 | Wheat | plastid | 90.81 | 91.06 |
| TraesCS2A01G335400.1 | Wheat | plastid | 91.36 | 88.91 |
| Os04t0464800-00 | Rice | plastid | 55.79 | 70.83 |
| OQU81723 | Sorghum | plastid | 67.74 | 70.53 |
| Zm00001d025633_P007 | Maize | plastid | 66.45 | 69.59 |
| Zm00001d025629_P007 | Maize | plastid | 66.45 | 69.59 |
| Solyc08g044250.1.1 | Tomato | mitochondrion | 3.03 | 60.0 |
| PGSC0003DMT400069622 | Potato | cytosol | 12.78 | 55.38 |
| GSMUA_Achr10P... | Banana | plastid | 45.68 | 49.75 |
| CDY49049 | Canola | plastid | 42.19 | 47.03 |
| CDY37526 | Canola | plastid | 42.1 | 46.69 |
| Bra039123.1-P | Field mustard | plastid | 42.28 | 46.42 |
| HORVU1Hr1G001270.1 | Barley | cytosol, nucleus | 5.15 | 45.9 |
| VIT_14s0066g01910.t01 | Wine grape | cytosol | 43.75 | 45.59 |
| AT3G01370.1 | Thale cress | plastid | 42.0 | 45.2 |
| KRG93409 | Soybean | plastid | 40.99 | 43.43 |
| PGSC0003DMT400003527 | Potato | plastid | 40.62 | 42.14 |
| KRG93411 | Soybean | plastid | 37.68 | 39.65 |
| Solyc02g087250.2.1 | Tomato | extracellular | 41.08 | 35.45 |
| HORVU1Hr1G083550.4 | Barley | plasma membrane | 23.44 | 32.9 |
| HORVU7Hr1G052190.1 | Barley | plastid | 26.19 | 32.13 |
| HORVU5Hr1G057460.1 | Barley | nucleus, plastid | 21.97 | 23.83 |
| HORVU3Hr1G110360.1 | Barley | mitochondrion | 7.35 | 20.0 |
| HORVU2Hr1G084980.4 | Barley | plastid | 9.1 | 17.62 |
| HORVU1Hr1G019580.2 | Barley | plastid | 7.26 | 13.81 |
Protein Annotations
| MapMan:16.12.2.1.2 | Gene3D:3.30.110.60 | UniProt:A0A287IM37 | ncoils:Coil | GO:GO:0000372 | GO:GO:0000373 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009532 |
| GO:GO:0009536 | GO:GO:0009987 | EnsemblPlantsGene:HORVU2Hr1G081140 | EnsemblPlants:HORVU2Hr1G081140.2 | InterPro:IPR001890 | InterPro:IPR035920 |
| PFAM:PF01985 | PFscan:PS51295 | PANTHER:PTHR31846 | PANTHER:PTHR31846:SF16 | InterPro:RNA-binding_CRM | SMART:SM01103 |
| SUPFAM:SSF75471 | UniParc:UPI000B464061 | InterPro:YhbY_like_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr2H:+:588239215..588248586
Molecular Weight (calculated)
121156.0 Da
IEP (calculated)
8.027
GRAVY (calculated)
-0.651
Length
1088 amino acids
Sequence
(BLAST)
(BLAST)
0001: SSRLKPLFLH RFPPPPAQML LQFSPHPSPL ILSLPVATSR PRHPHPRLPP VRASPSSEPE LLAKSALRRI SDKLRSLGYL ETSPEVPIPA LAQDPRAGAP
0101: SPGEIFVPTP AQLPRHRVGS TLDPSWATGD GEADAARRRQ RRGRDAAAAP TPPSAAELTL PRDELRRLQG VGIRLRKRLK VGKPGVTEGI VNGIHERWRN
0201: AELVKIRCDD ISAMNMRRTH EVLERKTGGL VIWRSGSTII LYRGTNYKYP YFHDQQKMDD CLKDESSEES SSDDDEDLGF LSVEQCGSEE DVKNHTEDSI
0301: HDEDEDGDNF GTVYGEHRSI GEEHENHDIL SVEQSVSRKK DANHPMTSSK APVVHTQEGR SAVKNNNGVA NKQHARFHIS TNVNPPSEVR PLARSTLVTG
0401: VGSPNKFRLQ LPGEVKLAKE DDKLLDGLGP RFSEWWGYDP LPVDADLLPA IVPGFRRPFR LLPSGVPPKL TDREMTILRR LARPLPYHYA LGRSSNLQGL
0501: AASIIKLWER CEVAKIAMKR GPYCIDSELV SEELKGLTGG TLLSRDNESI VLYRGKDFLP QAVSLAIEKR RKHDNSMINK PKPEIEESIP TQDASELKIA
0601: NDASVHGHEC HEGETSVSEY RTESLNTVAQ NMETRLSQAL TEKEKAEKLL EELEKASRSS KAETREVISE EERYMLRKVG LQMKPFLLLG RRGVFDGTIE
0701: NMHLHWKYRE LVKIICKEHS MEDVTYAART LEAESGGILV AVERVSKGHA IIMYRGKNYQ RPSSLRPKSL LNKKDALKRS VELQRRKSLK LHVLNLSKNI
0801: DYLRGQLMNS GHENKGMHDL CDNSGTSGET SKEVPEVAPE CFEPEGEECS SGGTNGILNT SSSGVWLDDT QNKLCLNGLK DHSSEVSRSC LNEGSNTASS
0901: DNQIEYQNRL SFPVACHSDN GSEEDSKILK TLGPSQALEE PILDQKHTPR LPSKAAPLSN RERLVLRKQA LQMKKRPVLA IGRNNVITGV AKTIRTHFKK
1001: HPLAVVNIKN RADGTPVQQL ISELEEATGS VLVSREPNKV ILYRGWGADA TQTSSREDST YVGEKEVISP QLLEAIRLEC GLHPGESQ
0101: SPGEIFVPTP AQLPRHRVGS TLDPSWATGD GEADAARRRQ RRGRDAAAAP TPPSAAELTL PRDELRRLQG VGIRLRKRLK VGKPGVTEGI VNGIHERWRN
0201: AELVKIRCDD ISAMNMRRTH EVLERKTGGL VIWRSGSTII LYRGTNYKYP YFHDQQKMDD CLKDESSEES SSDDDEDLGF LSVEQCGSEE DVKNHTEDSI
0301: HDEDEDGDNF GTVYGEHRSI GEEHENHDIL SVEQSVSRKK DANHPMTSSK APVVHTQEGR SAVKNNNGVA NKQHARFHIS TNVNPPSEVR PLARSTLVTG
0401: VGSPNKFRLQ LPGEVKLAKE DDKLLDGLGP RFSEWWGYDP LPVDADLLPA IVPGFRRPFR LLPSGVPPKL TDREMTILRR LARPLPYHYA LGRSSNLQGL
0501: AASIIKLWER CEVAKIAMKR GPYCIDSELV SEELKGLTGG TLLSRDNESI VLYRGKDFLP QAVSLAIEKR RKHDNSMINK PKPEIEESIP TQDASELKIA
0601: NDASVHGHEC HEGETSVSEY RTESLNTVAQ NMETRLSQAL TEKEKAEKLL EELEKASRSS KAETREVISE EERYMLRKVG LQMKPFLLLG RRGVFDGTIE
0701: NMHLHWKYRE LVKIICKEHS MEDVTYAART LEAESGGILV AVERVSKGHA IIMYRGKNYQ RPSSLRPKSL LNKKDALKRS VELQRRKSLK LHVLNLSKNI
0801: DYLRGQLMNS GHENKGMHDL CDNSGTSGET SKEVPEVAPE CFEPEGEECS SGGTNGILNT SSSGVWLDDT QNKLCLNGLK DHSSEVSRSC LNEGSNTASS
0901: DNQIEYQNRL SFPVACHSDN GSEEDSKILK TLGPSQALEE PILDQKHTPR LPSKAAPLSN RERLVLRKQA LQMKKRPVLA IGRNNVITGV AKTIRTHFKK
1001: HPLAVVNIKN RADGTPVQQL ISELEEATGS VLVSREPNKV ILYRGWGADA TQTSSREDST YVGEKEVISP QLLEAIRLEC GLHPGESQ
0001: MLLPLFHQQP LILAKTFPDR IFPPFLVPNT LVSRRNVSRA NSGIFCSSAS GRKTLPQSAI QRIAEKLRSL GFVEEKHDSP TRRITGEESG KNSPGEIFVP
0101: LPKQLPIHRV GHTIDTSWST PSYPVPKPGS GTAISRYHEL KRVWKKETEM ERKKEEKVPS LAELTLPPAE LRRLRTVGIR LTKKLKIGKA GITEGIVNGI
0201: HERWRTTEVV KIFCEDISRM NMKRTHDVLE TKTGGLVIWR SGSKILLYRG VNYQYPYFVS DRDLAHEAAS GASSMDQGVV DSREKQSIAE SSAPSITNKM
0301: VKPMLTQGVG SPDKVRFQLP GEVQLVEEAD RLLEGLGPRF TDWWAYDPLP VDGDLLPAVV PDYRRPFRLL PYGVSPKLTD DEMTTIRRLG RPLPCHFALG
0401: RNRNLQGLAV AIVKLWEKCE LAKIAVKRGV QNTNSELMAE ELKWLTGGTL ISRDKDFIVL YRGKDFLPSA VSSAIEERRR QTMIMENSSV HGNKLTENEE
0501: EIKPRAVKED IELEAKDQKD HIQTHQMKSR QRNSPEAILE KTSMKLSMAL EKKANAEKVL ADLENRESPQ LSDIDKEGIT NDEKYMLRKI GLKMKPFLLL
0601: GRRGVFDGTI ENMHLHWKYR ELVKIICNEY SIEAAHKVAE ILEAESGGIL VAVEMVSKGY AIIVYRGKNY ERPQCLRPQT LLSKREALKR SVEAQRRKSL
0701: KLHVLKLSNN IEELNRQLVE DSATNETWSD GESSNMMVEE ETENQHTEPE KAREKIELGY SSDLSVPSSG EENWEDDSEG EVDPLTTSSQ EYQEDESESA
0801: SSQRHEGNSL DSTANLSVFA ETGSANASSF HDRSLPHNSF LNANRKLPGS STGSGSQISA LRERKSENDG LVTDLSNRER LILRKQALKM KKRPPFAVGR
0901: SNVVTGLART LKMHFQKNPL AIVNVKGRAN GTSVQEVIAK LKEETGALLV SQEPSKVILY RGWGAEEEMK SFYPNNNVKS SINLPSTRSF VDDPPHVSPA
1001: LIEAIRLECG L
0101: LPKQLPIHRV GHTIDTSWST PSYPVPKPGS GTAISRYHEL KRVWKKETEM ERKKEEKVPS LAELTLPPAE LRRLRTVGIR LTKKLKIGKA GITEGIVNGI
0201: HERWRTTEVV KIFCEDISRM NMKRTHDVLE TKTGGLVIWR SGSKILLYRG VNYQYPYFVS DRDLAHEAAS GASSMDQGVV DSREKQSIAE SSAPSITNKM
0301: VKPMLTQGVG SPDKVRFQLP GEVQLVEEAD RLLEGLGPRF TDWWAYDPLP VDGDLLPAVV PDYRRPFRLL PYGVSPKLTD DEMTTIRRLG RPLPCHFALG
0401: RNRNLQGLAV AIVKLWEKCE LAKIAVKRGV QNTNSELMAE ELKWLTGGTL ISRDKDFIVL YRGKDFLPSA VSSAIEERRR QTMIMENSSV HGNKLTENEE
0501: EIKPRAVKED IELEAKDQKD HIQTHQMKSR QRNSPEAILE KTSMKLSMAL EKKANAEKVL ADLENRESPQ LSDIDKEGIT NDEKYMLRKI GLKMKPFLLL
0601: GRRGVFDGTI ENMHLHWKYR ELVKIICNEY SIEAAHKVAE ILEAESGGIL VAVEMVSKGY AIIVYRGKNY ERPQCLRPQT LLSKREALKR SVEAQRRKSL
0701: KLHVLKLSNN IEELNRQLVE DSATNETWSD GESSNMMVEE ETENQHTEPE KAREKIELGY SSDLSVPSSG EENWEDDSEG EVDPLTTSSQ EYQEDESESA
0801: SSQRHEGNSL DSTANLSVFA ETGSANASSF HDRSLPHNSF LNANRKLPGS STGSGSQISA LRERKSENDG LVTDLSNRER LILRKQALKM KKRPPFAVGR
0901: SNVVTGLART LKMHFQKNPL AIVNVKGRAN GTSVQEVIAK LKEETGALLV SQEPSKVILY RGWGAEEEMK SFYPNNNVKS SINLPSTRSF VDDPPHVSPA
1001: LIEAIRLECG L
Arabidopsis Description
CFM2CRM-domain containing factor CFM2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8L7C2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.