Factsheet for Os04t0464800-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 2
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0184400-01
Os02t0656300-01
Os06t0643800-01
Os06t0679100-00
Os08t0301500-01
Os10t0512800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01370.1	Os02t0656300-01	AT3G48150.1	21798944
AT3G01370.1	Os06t0679100-00	AT3G48150.1	21798944
AT3G01370.1	Os10t0512800-01	AT4G39050.1	21798944
AT3G01370.1	Os02t0184400-01	AT5G20280.1	21798944
AT3G01370.1	Os06t0643800-01	AT5G20280.1	21798944
AT3G01370.1	Os08t0301500-01	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g044250.1.1	Tomato	mitochondrion	3.97	61.82
TraesCS2B01G346500.1	Wheat	plastid	71.41	56.41
OQU81723	Sorghum	plastid	68.61	56.27
TraesCS2D01G327400.1	Wheat	plastid	70.95	56.04
HORVU2Hr1G081140.2	Barley	plastid	70.83	55.79
Zm00001d025633_P007	Maize	plastid	66.98	55.25
Zm00001d025629_P007	Maize	plastid	66.98	55.25
TraesCS2A01G335400.1	Wheat	plastid	71.3	54.65
PGSC0003DMT400069622	Potato	cytosol	15.4	52.59
GSMUA_Achr10P...	Banana	plastid	46.79	40.14
CDY37526	Canola	plastid	43.17	37.72
Bra039123.1-P	Field mustard	plastid	43.41	37.54
CDY49049	Canola	plastid	42.71	37.5
VIT_14s0066g01910.t01	Wine grape	cytosol	45.62	37.45
KRG93409	Soybean	plastid	43.52	36.32
AT3G01370.1	Thale cress	plastid	42.59	36.1
PGSC0003DMT400003527	Potato	plastid	42.47	34.7
Os05t0551900-00	Rice	plastid	29.99	32.86
KRG93411	Soybean	plastid	39.44	32.69
Os11t0592400-00	Rice	plastid	33.14	32.05
Os08t0360100-01	Rice	plastid	26.72	31.59
Solyc02g087250.2.1	Tomato	extracellular	43.52	29.58
Os09t0363100-01	Rice	plastid	27.54	24.92
Os06t0304500-01	Rice	mitochondrion	9.33	22.99
Os01t0958400-02	Rice	mitochondrion	9.57	19.66
Os04t0492900-03	Rice	mitochondrion	9.1	16.28
Os05t0145300-01	Rice	mitochondrion	8.63	13.21

Protein Annotations

MapMan:16.12.2.1.2	Gene3D:3.30.110.60	UniProt:A0A0P0WB50	ProteinID:BAS89589.1	ncoils:Coil	GO:GO:0000372
GO:GO:0000373	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009532	GO:GO:0009536	GO:GO:0009987	InterPro:IPR001890	InterPro:IPR035920	EnsemblPlantsGene:Os04g0464800
EnsemblPlants:Os04t0464800-00	PFAM:PD010559	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF16
InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI000393AE41	InterPro:YhbY_like_sf	SEG:seg

Description

Similar to OSIGBa0130P02.2 protein. (Os04t0464800-00)

Coordinates

chr4:-:23212414..23218087

Molecular Weight (calculated)

94624.3 Da

IEP (calculated)

7.711

GRAVY (calculated)

-0.550

Length

857 amino acids

Sequence
(BLAST)

001: MLLLFLPHPS PPLLPPAASR TRPPPRLLLP PIHASPSPEL LAKSALRRIS DKLRSLGYLE ADHPEAAPGP AAPEAGAGAS PGEIFVPTPA QLPRHRVGST
101: LDPSWATGDG EGAAASRRRR RGGRDSSAAA SAPPSAAELA LPRDELRRLQ GAGIRLRNRL KVGKAGVTEG IVNGIHERWR NAELVKIRCD DVSAMNMKRT
201: HEILERKTGG LVIWRSGSTI ILYRGTDYKY PYFHDREMKN DMDESSEHTS SDDEDADLAI IASEQSGSEE DSDNPAEHGS NHTEEGDDLT RRFGVDALEG
301: NLDIGSAEQS INSATKDQQA ILHTSTNVSR PSEISGRARS TLVAGVGSPN KFRLQLPGEV KLAEEADKLL DGLGPRFSDW WGYDPLPVDA DLLPAIVPGY
401: RRPFRLLPSG VPPRLTDREM TILRRLARPL PYHYALGRSS NLQGLAASMI KLWERCEVAK VAIKRGAENI DSDLISEKLK GLTGGTLLSR DNESIVFYRG
501: KDFLPTAVSL AIEKRRKYGN STISNPKLNF DKSTPQNSSK LKMATDVSLD GHECYEKKHK DETAVSDNRA ESLNVFAQNV EARLSQAIAE KEKTEKLIEE
601: LEMSSEPSRA ETREVISEEE RYMLRKVGLK MKSFLLLGRR GVFDGTVENM HLHWKYRELV KIICKEHNIK DVEYAARTLE AESGGILVAV ERVSKAHAII
701: IYRGKNYQRP STLRPKSLLN KKDALKRSVE YQRYKSLKLH VLNLSKNIDY LKDQMVSHHN QGILDLNVNS GTLVDKKEEV SEVLPECAKS VVVECSSGES
801: ETEGTSVLTK SGVPLDVMQN KLLCFSKHTD DLSETTSSCL TESTSTSSES THVTKST

Best Arabidopsis Sequence Match ( AT3G01370.1 )
(BLAST)

0001: MLLPLFHQQP LILAKTFPDR IFPPFLVPNT LVSRRNVSRA NSGIFCSSAS GRKTLPQSAI QRIAEKLRSL GFVEEKHDSP TRRITGEESG KNSPGEIFVP
0101: LPKQLPIHRV GHTIDTSWST PSYPVPKPGS GTAISRYHEL KRVWKKETEM ERKKEEKVPS LAELTLPPAE LRRLRTVGIR LTKKLKIGKA GITEGIVNGI
0201: HERWRTTEVV KIFCEDISRM NMKRTHDVLE TKTGGLVIWR SGSKILLYRG VNYQYPYFVS DRDLAHEAAS GASSMDQGVV DSREKQSIAE SSAPSITNKM
0301: VKPMLTQGVG SPDKVRFQLP GEVQLVEEAD RLLEGLGPRF TDWWAYDPLP VDGDLLPAVV PDYRRPFRLL PYGVSPKLTD DEMTTIRRLG RPLPCHFALG
0401: RNRNLQGLAV AIVKLWEKCE LAKIAVKRGV QNTNSELMAE ELKWLTGGTL ISRDKDFIVL YRGKDFLPSA VSSAIEERRR QTMIMENSSV HGNKLTENEE
0501: EIKPRAVKED IELEAKDQKD HIQTHQMKSR QRNSPEAILE KTSMKLSMAL EKKANAEKVL ADLENRESPQ LSDIDKEGIT NDEKYMLRKI GLKMKPFLLL
0601: GRRGVFDGTI ENMHLHWKYR ELVKIICNEY SIEAAHKVAE ILEAESGGIL VAVEMVSKGY AIIVYRGKNY ERPQCLRPQT LLSKREALKR SVEAQRRKSL
0701: KLHVLKLSNN IEELNRQLVE DSATNETWSD GESSNMMVEE ETENQHTEPE KAREKIELGY SSDLSVPSSG EENWEDDSEG EVDPLTTSSQ EYQEDESESA
0801: SSQRHEGNSL DSTANLSVFA ETGSANASSF HDRSLPHNSF LNANRKLPGS STGSGSQISA LRERKSENDG LVTDLSNRER LILRKQALKM KKRPPFAVGR
0901: SNVVTGLART LKMHFQKNPL AIVNVKGRAN GTSVQEVIAK LKEETGALLV SQEPSKVILY RGWGAEEEMK SFYPNNNVKS SINLPSTRSF VDDPPHVSPA
1001: LIEAIRLECG L

Arabidopsis Description

CFM2CRM-domain containing factor CFM2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8L7C2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.