Factsheet for Os06t0304500-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G128100.1	Wheat	mitochondrion	77.87	80.42
TraesCS7D01G222900.1	Wheat	mitochondrion	77.01	79.76
TraesCS7A01G219200.1	Wheat	mitochondrion	77.01	79.76
Zm00001d025706_P002	Maize	mitochondrion	75.86	78.11
EES12394	Sorghum	mitochondrion	73.85	76.04
VIT_10s0092g00060.t01	Wine grape	nucleus	54.89	71.0
PGSC0003DMT400032783	Potato	mitochondrion	54.02	67.87
Bra034894.1-P	Field mustard	mitochondrion	54.02	58.2
CDY49592	Canola	mitochondrion	54.31	58.15
CDY34540	Canola	mitochondrion	54.02	58.02
KRH07419	Soybean	cytosol	43.1	57.47
GSMUA_Achr9P12700_001	Banana	mitochondrion	58.91	54.67
KRH60382	Soybean	mitochondrion	58.05	54.45
AT4G13070.1	Thale cress	mitochondrion	53.16	53.94
KRH41679	Soybean	mitochondrion	57.47	53.91
Solyc01g105090.2.1	Tomato	plastid	54.6	50.67
Os01t0958400-02	Rice	mitochondrion	41.95	35.01
KRH65957	Soybean	cytosol, mitochondrion, nucleus, plastid	46.84	32.67
Os04t0492900-03	Rice	mitochondrion	33.91	24.63
Os05t0145300-01	Rice	mitochondrion	31.32	19.46
Os05t0551900-00	Rice	plastid	25.57	11.38
Os08t0360100-01	Rice	plastid	22.7	10.9
Os11t0592400-00	Rice	plastid	25.0	9.82
Os09t0363100-01	Rice	plastid	25.57	9.4
Os04t0464800-00	Rice	plastid	22.99	9.33

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	EntrezGene:4340839	ProteinID:BAF19379.1	ProteinID:BAS97401.1	ncoils:Coil
ProteinID:EAZ36751.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890
InterPro:IPR035920	EnsemblPlantsGene:Os06g0304500	EnsemblPlants:Os06t0304500-01	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31426
PANTHER:PTHR31426:SF3	UniProt:Q0DCP4	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0000E12790
RefSeq:XP_015644409.1	InterPro:YhbY_like_sf	SEG:seg	:	:	:

Description

RNA-binding, CRM domain domain containing protein. (Os06t0304500-01)

Coordinates

chr6:+:11483108..11486724

Molecular Weight (calculated)

39814.1 Da

IEP (calculated)

10.638

GRAVY (calculated)

-0.857

Length

348 amino acids

Sequence
(BLAST)

001: MASLAPCLLR RRPLRSAAAA ALVHPSGSWM RPRGAGSSPR PPGASPLFEP PRVVSERWMD GRGWWFRFRQ PVRHGSTAVT LDTGGGFARF SVGGDAGTKQ
101: GAGRKGQPPA KAAKKKMSRK AKVNQLKWYR LKAKKKMKSP NPEVRIRYKL EKAKRKEEWL IEKLRKYEVP RSPEPVHDPE ILTEEEKFYL KRTGEKKKNY
201: VPVGRRGVFG GVVLNMHLHW KKHETVKVIC KPCRPGQVYE YAEELTRLSK GTVIDIKPNN TIIFYRGKNY VQPKVMSPPD TLSKQKALEK YRYEQSLEHT
301: SQFIEKLEKE LEDYQKHVAL FKNRGETLET ISSEETNVDD LTSSSDTE

Best Arabidopsis Sequence Match ( AT4G13070.1 )
(BLAST)

001: MLALGYAKEI AQRFLRNPKW TSRFFLLHYQ SSNYSSYVKS RPFLQVQCKS ASFDVSQAQR WNLFAYDGLF SRRYLSNSTI ELRTDDNVVR FAFNNVSSSG
101: NNVVPTRKEK KWKRAKLSRK AKVNELRFYR LKAKKKMNSP NPEVRIRYKL EKAKRKEEWL IEKLRKYDVP KSPAEPYDPE SLTEEEQHYL KRTGEKRKNF
201: VLVGRRGVFG GVVLNLHLHW KKHETVKVIC KPCNKPGQVH EYAEELARLS KGIVIDVKPN NTIVLYRGKN YVRPEVMSPV DTLSKDKALE KYRYEQSLEH
301: TSEFIEKLEK ELEEYHKYVA RHKKKKDEEA EKKKEAVSKS KVV

Arabidopsis Description

At4g13070 [Source:UniProtKB/TrEMBL;Acc:Q67YJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.