Factsheet for Os11t0592400-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G150500.1	Wheat	plastid	66.03	78.73
Zm00001d007572_P001	Maize	plastid	71.67	75.42
TraesCS4D01G150700.1	Wheat	plastid	71.56	74.41
TraesCS4B01G161000.1	Wheat	plastid	71.44	74.21
OQU83762	Sorghum	cytosol, nucleus, plastid	71.33	73.92
HORVU7Hr1G052190.1	Barley	plastid	71.11	71.03
GSMUA_Achr3P29330_001	Banana	cytosol, nucleus, plastid	50.34	52.53
KRG92332	Soybean	plastid	47.52	50.42
KRH34465	Soybean	plastid	44.47	48.94
VIT_05s0020g04770.t01	Wine grape	plastid	49.44	48.56
CDY10696	Canola	plastid	46.61	48.25
PGSC0003DMT400002898	Potato	mitochondrion	47.86	48.02
Solyc09g083350.2.1	Tomato	mitochondrion	47.74	47.9
CDY10350	Canola	plastid	46.5	47.52
Bra033883.1-P	Field mustard	mitochondrion	46.39	47.46
AT3G23070.1	Thale cress	plastid	46.61	46.88
CDY16286	Canola	plastid	45.03	46.34
CDY29740	Canola	plastid	45.82	46.24
Bra036865.1-P	Field mustard	plastid	44.81	46.16
AT4G14510.1	Thale cress	plastid	44.47	43.44
CDY70711	Canola	nucleus	12.53	43.19
Os05t0551900-00	Rice	plastid	31.83	36.06
Os09t0363100-01	Rice	plastid	36.57	34.21
Os04t0464800-00	Rice	plastid	32.05	33.14
Os08t0360100-01	Rice	plastid	25.62	31.31
Os06t0304500-01	Rice	mitochondrion	9.82	25.0
Bra036994.1-P	Field mustard	nucleus	19.19	22.94
Os01t0958400-02	Rice	mitochondrion	9.93	21.1
Os04t0492900-03	Rice	mitochondrion	10.38	19.21
Os05t0145300-01	Rice	mitochondrion	9.71	15.36

Protein Annotations

MapMan:16.12.2.1.3	Gene3D:3.30.110.60	EntrezGene:4350825	ProteinID:ABA94534.1	ProteinID:BAF28555.2	ProteinID:BAT14685.1
InterPro:CFM3	ncoils:Coil	GO:GO:0000373	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	InterPro:IPR001890	InterPro:IPR035920	EnsemblPlantsGene:Os11g0592400	EnsemblPlants:Os11t0592400-00
PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF13	UniProt:Q2R1U8	InterPro:RNA-binding_CRM
SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0000681F56	RefSeq:XP_015616314.1	InterPro:YhbY_like_sf	SEG:seg

Description

CFM3Similar to CRS1/YhbY domain containing protein, expressed. (Os11t0592400-00)

Coordinates

chr11:-:22523670..22529610

Molecular Weight (calculated)

99220.8 Da

IEP (calculated)

5.994

GRAVY (calculated)

-0.695

Length

886 amino acids

Sequence
(BLAST)

001: MAAAAMAISP SIHLHLHLHL HHPPRLHRLL HLSTTSPYPW LSAWPTAHRR RVPLRRPASA LDLRPEPSPS SDSDDDAAFG TSRSSSRSAM SLILSRLRNS
101: GYSYSPPELP PRPPRGSVED VFRVDDGVVP NARGGFDDDA ESALVDARFP WELPMPPPEA GPRAARSKAW MAELTLPEAE LRRLRHAGMR LKSRIKVGGA
201: GVTREIVERI RDRWRNDEVV RIKVTGTPAL NMRLFHEILE RKTGGLVIWR SGTSVSLYRG VAYDIPEPTK GTSKNTQTLG MKSSIKEPPG HSLLPNEKVN
301: EMQDNNGALV SNAEKDTLVE PVPEIKYEDE IDKLLDELGP RYDDWPRPDP SPVDADLLPA TVPGYKPPFR VLPYGVRPSL SRRDTTNLRR LARGLPPHFA
401: LGRSRQLQGL AAAMVKLWEK SSIAKIALKR GVQLTTSERM AEDIKKLTGG VMLSRNNDFM VFYRGKDFLS PELAEKLLER ERWAKSLQDE EQARLNAASS
501: FSSRTEAPVE PTVAGTLGET LEANSKYGNK LDENYENKMT RTVEAARHAD LVRKLEWKLQ LAQKKIEKAE RVLGKVETAL KPTEGIQPPE TITDEERFMF
601: RKLGLRMKAF LLLGRRGVFD GTIENMHLHW KYRELVKILV KAKSFGDVKK IALSLEAESG GILVSVDKVS KGYAIVVFRG KDYARPSKLR PRNLLSKRKA
701: LARSIEIQRR EALSHHIATL NRRVKKLKAE LLQMEGVKEE GDVELYAKLD SAYSSDEEDV EDEDDEAYLR SFDNSVAVQN GDDRTSLDGS DANSDDEGDY
801: SDEDDDEDDD NDEEDGFDYE NDDEDDVPPT TSDGDLYNHT DFGSSDSENY VSLSGRGDPD VKSKGSALDS RNSYSEQSTE LTNTCS

Best Arabidopsis Sequence Match ( AT3G23070.1 )
(BLAST)

001: MAMKPSLHFC PTTVTKKFVY SFQSSFCFRF LRYSSSISLG SCKGVTFSSR NDQIASRRFS FSRDCNNGVW LENWNRIQKR NQPKPPKVVV NYRKEGRFSG
101: SEIVSGDDNR SRDGDGSTME KIVEKLKKYG YMEEVQNKEI EQERRIEKGS VEDIFYVEEG KLPNTRGGFT EESLLGGENV IGSNGDVGFP WEKMSAKEKK
201: ELEAEWTAKK ENRYSLAEMT LPESELRRLR NLTFRTASKM RIRGGGVTQV AVDAIKEKWK SAEIVRLKIE GASALNMRKM HEILEKKTGG LVIWRSGTSI
301: SLYRGVSYEL PSGKWNKQRR EETPPEAVIE NHDETTTMVD KSDEKVHLPQ LEQETTSVEK KDQTSPVVEY EDELDELLDD LGPRFMDWPG DNPLPVDADL
401: LPGAIPDYEP PFRVLPYGVR SSLGPKEATA LRRLARSIPP HFALGRSRQL QGLATAMVRL WEKSMLAKIA IKRGVQSTTS ERMAEDLKKL TGGIMLSRNK
501: DFLVFYRGKN FLSREVADAL VEQERFVRTL QDEEEQARLR GSSALIVPST EPANKLVSAG TLGETLDATG KWGKNLDDDD HSDEVKQEVE ILRHENLVRK
601: LERKLAFAER KLLKAERGLA KVEVCLKPAE QREDPESITD EERFMFRKLG LKMKAFLLLG RRGVFDGTVE NMHLHWKYRE LVKIIVKAKT FDGVKKVALA
701: LEAESGGILV SIDKVTKGYA IIVYRGQDYK RPTMLRPKNL LTKRKALARS IELQRREGLL KHISTMQAKA KQLRAEIEQM EKVTDKGDEE LYNKLDMAYA
801: SSDEETDEED DDDAFPETYA EGEDGEEGEI LAGELSETED KDLDSNESET GFGDDSVLFA EDLHTKSEDL PNKKVRLQHQ S

Arabidopsis Description

CFM3ACRM-domain containing factor CFM3A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4J2U9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.