CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29740	Canola	plastid	94.08	92.26
Bra036865.1-P	Field mustard	plastid	92.1	92.21
AT4G14510.1	Thale cress	plastid	79.09	75.08
CDY10696	Canola	plastid	63.41	63.78
CDY10350	Canola	plastid	63.53	63.09
KRG92332	Soybean	plastid	52.38	54.01
PGSC0003DMT400002898	Potato	mitochondrion	54.12	52.77
Solyc09g083350.2.1	Tomato	mitochondrion	54.01	52.66
VIT_05s0020g04770.t01	Wine grape	plastid	54.82	52.33
KRH34465	Soybean	plastid	48.9	52.3
TraesCS4A01G150500.1	Wheat	plastid	43.44	50.34
GSMUA_Achr3P29330_001	Banana	cytosol, nucleus, plastid	48.43	49.12
TraesCS4D01G150700.1	Wheat	plastid	45.88	46.36
TraesCS4B01G161000.1	Wheat	plastid	45.88	46.31
Zm00001d007572_P001	Maize	plastid	44.6	45.61
OQU83762	Sorghum	cytosol, nucleus, plastid	44.95	45.26
HORVU7Hr1G052190.1	Barley	plastid	46.46	45.1
Os11t0592400-00	Rice	plastid	46.34	45.03
CDY30199	Canola	cytosol	33.33	44.77
CDX92233	Canola	cytosol	5.11	44.44
CDY70711	Canola	nucleus	13.24	44.36
CDX95528	Canola	cytosol	24.04	43.76
CDY46704	Canola	plastid	35.08	38.57
CDY18518	Canola	plastid	32.29	34.49
CDX75965	Canola	plastid	33.45	34.29
CDY51940	Canola	plastid	33.22	34.09
GSMUA_Achr8P05580_001	Banana	plasma membrane	21.49	31.73
CDY49049	Canola	plastid	31.59	27.87
CDY37526	Canola	plastid	31.48	27.62
CDY49592	Canola	mitochondrion	9.18	24.31
CDY34540	Canola	mitochondrion	9.06	24.07
CDY27892	Canola	plastid	10.69	21.1
CDX95529	Canola	plastid	7.32	20.79
CDX83289	Canola	mitochondrion	8.94	20.7
CDY00840	Canola	plastid	10.57	20.59
CDY31205	Canola	mitochondrion	8.71	20.16
CDX85512	Canola	golgi	25.44	19.98
CDY38130	Canola	golgi	24.85	19.4
CDY15751	Canola	mitochondrion, plastid, vacuole	7.2	17.87
CDY66660	Canola	plastid	9.18	17.48
CDY13722	Canola	mitochondrion, nucleus, plastid	8.83	15.2
CDX83707	Canola	mitochondrion, nucleus, plastid	8.83	15.08
CDY03983	Canola	cytosol	8.94	10.52

Protein Annotations

MapMan:16.12.2.1.3	Gene3D:3.30.110.60	GO:A0A078FT55	UniProt:A0A078FT55	EnsemblPlants:CDY16286	ProteinID:CDY16286
ProteinID:CDY16286.1	InterPro:CFM3	ncoils:Coil	GO:GO:0000373	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00090782001	InterPro:IPR001890	InterPro:IPR035920	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31846
PANTHER:PTHR31846:SF13	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0004EF3D40	InterPro:YhbY_like_sf
SEG:seg	:	:	:	:	:

Description

BnaC01g23210DBnaC01g23210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FT55]

Coordinates

chrLK032062:+:408358..411797

Molecular Weight (calculated)

97976.8 Da

IEP (calculated)

6.416

GRAVY (calculated)

-0.726

Length

861 amino acids

Sequence
(BLAST)

001: MSEMAMNSIR HLYPAAATTT TTAVDSLGSS FCKLHGSTSL RFLRYSSSIS LWSHNGDVRR FGFCSTRKVK LCSGRDENWN ITQKQNQFNP VLNHRKGERF
101: SDLGRIVEKL KKFGFVDDDQ FQDEDIEHER RFVEEEEGNV RNRRGGFSEE SPFGVYGGDG EVKFPWEKVN SKEKKEEELV NGVWTAKKES RYSLAEMTLP
201: QAELNRLRNV MFRTKSKMRV KGAGVTQAVV DAIQEKWKSS EIVRLKIEGT NALNMRRMHE LLERKTGGLV IWRSGTSIAL YKYKNDTYRD APAQMNKQIY
301: RRAETSPSSL PTSRVDHSVE HVHHPQIEKE TTNVGNEDRT SHQEVEYEDE INELLEGLGP RYTDWQGGYP LPVDADMLPG IVPGYEPPFR VLPYGVRSTL
401: GQKEATSLRR LGKVLPPHFA LGRSRQLQGL ATAMVKLWEK SLIAKVALKR GVQLTTSERM AEDIKRLTGG MLLSRNKDFL IFYRGKSFLS PEVAEALVEK
501: ERLARTFQDE EEQARLRASS GLVVPRVKAN QNHLVSTGTL GETLDAASKW GRNLDDDDHV EEVKQEAEKL RSANLVRKLE RKLAFAEKRL MKAERALAKV
601: EESLKPSEHR TDTEGITEEE RFMFQKLGLR MKAFLLLGRR GVFDGTVENM HLHWKYRELV KILVKAKTFE GAQKVALALE AESGGILVSV DKVSKGYAII
701: VYRGKDYKRP SELRPKNLLT KRKALARSVE LQRRQAIIKH IEVVQARTEQ LRAEIEQVEL VKDKGDQVLY NKLDTAYSSS GEETEETDGE GDDIYSETYE
801: EEEEDGEEGG VQAKGSLSDV EFDSDDEDWD SDELETEFDD DSATPEATVV DPGNKERHLQ P

Best Arabidopsis Sequence Match ( AT4G14510.1 )
(BLAST)

001: MAINSSHHFC PMTTTTTTSA KFVDSLGSSF CKFHGTSSSI SLRSYRFGFS FMKNVKRLSC EGSSSSSSSR NENWNRTQKQ NQFRPSKVVL NRRKDERFSD
101: LGVISGENSS RSGDVGGGSG SSSTMEKIVE KLKKYGFVDE DQFQDKEVEQ ERRIEKSSVE ERFYVEERRG GFSEESPFGV YGGNDEVKFP WEKVSSMEKK
201: ELVNGEWTAK KESRYSLAEM TLSEFELNRL RNVMFRTKSK MRVTGAGVTQ AVVDAIQEKW KGSEIVRLKI EGSSALNMRR MHEILERKTG GLVIWRSGTS
301: IALYNYKGGS NRDGSGNMNK QVYRRAERLP SSLPTSTVDQ SVQLVNLPQL EKEPTVVGNK DRTSPQEVEY EDEINELLEG LGPRYTDWQG GYPLPVDADL
401: LPGIVPGYEP PFRALPYGVR STLGTKEATS LRRIATVLPP HFALGRSRQL QGLATAMVKL WQKSLIAKVA LKRGVQLTTS ERMAEDIKRL TGGMLLSRNK
501: DFLVFYRGKS FLSLEVGEAL MEKEMLVRTL QDEEEQARLR ASSALVVPSI KANQQLARTL QDKEEQARPS ALVLPSTKAN QNLVSAGTLG ETLDATGKWG
601: KNLDNDDHVE EMKQEVEKVR SAKLVRKLER KLAFAEKKLL KAERALAKVE ESLKPAEQRT DLEGITEEER FMFQKLGLKM KAFLLLGRRG VFDGTVENMH
701: LHWKYRELIK ILVKAKTLEG AQKVAMALEA ESGGILVSVD KISKGYAVIV YRGKDYKRPT TLRPKNLLTK RKALARSLEL QKREALIKHI EAIQTRSEQL
801: RAEIEQVELV KDKGDETLYD KLDMAYSSDE ETEETDGEED DVYLDTYEDE GEDDEEGGIQ ANGSLSETDV EFGSDESDTD FGDNSASSTT PETTFVELQN
901: EELDVQP

Arabidopsis Description

CFM3BCRM-domain containing factor CFM3B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4JVH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.