CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83289	Canola	mitochondrion	95.7	95.7
AT2G28480.1	Thale cress	mitochondrion	83.87	83.87
CDY15751	Canola	mitochondrion, plastid, vacuole	56.99	61.1
Solyc09g005270.2.1	Tomato	mitochondrion	59.95	60.93
PGSC0003DMT400030768	Potato	mitochondrion	59.41	60.05
KRH29618	Soybean	nucleus	43.28	56.69
VIT_05s0102g00700.t01	Wine grape	plastid	61.29	54.81
PGSC0003DMT400039655	Potato	mitochondrion, plastid	56.99	53.54
KRH24621	Soybean	mitochondrion	58.6	51.05
TraesCS3D01G505800.1	Wheat	mitochondrion	53.76	50.89
Solyc12g014280.1.1	Tomato	mitochondrion, plastid	55.91	50.36
TraesCS3B01G562100.1	Wheat	mitochondrion	53.49	50.25
HORVU3Hr1G110360.1	Barley	mitochondrion	53.23	49.5
Zm00001d042043_P001	Maize	mitochondrion	52.42	49.49
EES02081	Sorghum	mitochondrion	53.76	49.38
Os01t0958400-02	Rice	mitochondrion	51.34	45.8
TraesCS3A01G499000.2	Wheat	mitochondrion, nucleus	52.96	45.39
GSMUA_Achr3P16860_001	Banana	mitochondrion	53.76	44.74
CDY49592	Canola	mitochondrion	33.33	38.15
CDY34540	Canola	mitochondrion	33.06	37.96
CDX92233	Canola	cytosol	9.95	37.37
CDY27892	Canola	plastid	27.15	23.17
CDY00840	Canola	plastid	27.42	23.08
CDY66660	Canola	plastid	27.42	22.57
CDY13722	Canola	mitochondrion, nucleus, plastid	27.15	20.2
CDX83707	Canola	mitochondrion, nucleus, plastid	27.15	20.04
CDY70711	Canola	nucleus	11.02	15.95
CDX95528	Canola	cytosol	19.09	15.01
CDY03983	Canola	cytosol	26.88	13.66
CDY30199	Canola	cytosol	19.62	11.39
CDY18518	Canola	plastid	21.77	10.05
CDY51940	Canola	plastid	22.31	9.89
CDX75965	Canola	plastid	22.31	9.88
CDY46704	Canola	plastid	19.89	9.45
CDY10350	Canola	plastid	21.51	9.23
CDY10696	Canola	plastid	20.97	9.11
CDY29740	Canola	plastid	20.7	8.77
CDY16286	Canola	plastid	20.16	8.71
CDY49049	Canola	plastid	22.31	8.5
CDY37526	Canola	plastid	22.31	8.46
CDY38130	Canola	golgi	18.01	6.07
CDX85512	Canola	golgi	17.74	6.02
CDX95529	Canola	plastid	2.96	3.63

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	GO:A0A078GXM4	UniProt:A0A078GXM4	EnsemblPlants:CDY31205	ProteinID:CDY31205
ProteinID:CDY31205.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00047335001	InterPro:IPR001890	InterPro:IPR035920	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31426
PANTHER:PTHR31426:SF2	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0004EE60BD	InterPro:YhbY_like_sf
SEG:seg	:	:	:	:	:

Description

BnaC03g46860DBnaC03g46860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXM4]

Coordinates

chrLK032268:-:442047..444015

Molecular Weight (calculated)

42987.3 Da

IEP (calculated)

9.887

GRAVY (calculated)

-0.856

Length

372 amino acids

Sequence
(BLAST)

001: MAIAFVRSLQ RASSSLLRSS YPLLISARSI PQSREFACST STFFQPTIST ICRRNFSHGT VNLVISDGKP KFETRELDPP KKWKWLTKKR LKLKRKKERE
101: ERNAANRKDP RRLTVKGTKK RKFANPEERI KHKLERAKIK EASLVEKLKR YEVAKMQGPE VRPHEITGEE RFYLKKMGQK KSNYVPIGRR GVFGGVILNM
201: HMHWKKHETV KVICNNSKPG QVQQYAEELA KLSGGVPVNI IGDDTIVFYR GKGYVQPKVM SPIDTLSKKR AYEKSKYEQS LESVRHFIAI AEKELELYYR
301: HVALYDDPSN RNPLSILDDS PLDSCDHHRN RLYTSCSDTE ADSEDEEESD EELGELENDS PPSNEELSET VW

Best Arabidopsis Sequence Match ( AT2G28480.1 )
(BLAST)

001: MAIAFARGLR KASSFLRSSY PLLISSRLLP ISQEFYDSTL TFVLPTRPIC RNFSHGYGTV NLVISEGKPK FETRELDPPK KYKWLTKKRL KLKRKKEREE
101: RNAANRKDPR RLTVKGKKKK FVNAEERIKY KLEKAKIKEA LLIERLKRYE VAKVQGPEVR PHEITGEERF YLKKMGQKRS NYVPIGRRGV FGGVILNMHL
201: HWKKHETVKV ICNNSKPGQV QQYAEELAKL SGGVPVNIIG DDTIIFYRGK GYVQPQVMSP IDTLSKKRAY EKSKYEQSLE SVRHFIAIAE KELELYYRHV
301: ALYDDPNNRN PLSILDDSPS ESRQHHENEF FLSCSDTDSS SEDEDEDEEL CELDNGSSSS SSAKEELSES EN

Arabidopsis Description

At2g28480 [Source:UniProtKB/TrEMBL;Acc:Q9SK10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.