CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66660	Canola	plastid	58.06	94.03
CDX83707	Canola	mitochondrion, nucleus, plastid	54.37	78.97
CDY13722	Canola	mitochondrion, nucleus, plastid	53.83	78.8
AT3G27550.2	Thale cress	mitochondrion	54.51	72.94
PGSC0003DMT400015748	Potato	nucleus, plastid	38.11	52.35
Solyc07g047900.2.1	Tomato	mitochondrion, nucleus	39.34	50.26
Os05t0145300-01	Rice	mitochondrion	37.7	49.29
GSMUA_Achr9P19780_001	Banana	nucleus	37.43	48.41
KRH56532	Soybean	mitochondrion	42.62	47.78
KRG93197	Soybean	mitochondrion	42.35	47.47
HORVU1Hr1G019580.2	Barley	plastid	35.93	45.98
TraesCS1A01G108800.1	Wheat	mitochondrion	37.16	44.59
TraesCS1B01G108100.1	Wheat	mitochondrion	37.16	44.59
TraesCS1D01G090300.1	Wheat	mitochondrion	36.75	44.17
Zm00001d010884_P001	Maize	mitochondrion	37.43	42.48
Zm00001d024823_P001	Maize	mitochondrion	37.02	41.44
EES17695	Sorghum	plastid	38.25	40.88
VIT_14s0066g00360.t01	Wine grape	nucleus	47.81	32.8
CDX92233	Canola	cytosol	4.37	32.32
CDY34540	Canola	mitochondrion	13.93	31.48
CDY49592	Canola	mitochondrion	13.66	30.77
CDX83289	Canola	mitochondrion	13.8	27.15
CDY31205	Canola	mitochondrion	13.66	26.88
CDY00840	Canola	plastid	15.57	25.79
CDY27892	Canola	plastid	15.3	25.69
CDY15751	Canola	mitochondrion, plastid, vacuole	10.11	21.33
CDY70711	Canola	nucleus	5.05	14.4
CDX95528	Canola	cytosol	9.15	14.16
CDY30199	Canola	cytosol	9.84	11.23
CDY10350	Canola	plastid	12.43	10.5
CDY10696	Canola	plastid	12.02	10.28
CDX75965	Canola	plastid	11.61	10.12
CDY51940	Canola	plastid	11.48	10.01
CDY18518	Canola	plastid	10.66	9.68
CDY46704	Canola	plastid	9.84	9.2
CDY16286	Canola	plastid	10.52	8.94
CDY29740	Canola	plastid	10.38	8.66
CDY49049	Canola	plastid	11.2	8.4
CDY37526	Canola	plastid	11.07	8.26
CDY38130	Canola	golgi	10.93	7.25
CDX85512	Canola	golgi	10.66	7.12
CDX95529	Canola	plastid	0.96	2.31

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:A0A078EWR1	InterPro:Aim32/Apd1-like	EnsemblPlants:CDY03983	ProteinID:CDY03983
ProteinID:CDY03983.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00117511001	InterPro:IPR001890	InterPro:IPR035920	PFAM:PF01985	PFAM:PF06999	PFscan:PS51295
PANTHER:PTHR31426	PANTHER:PTHR31426:SF4	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF52833	SUPFAM:SSF75471
TMHMM:TMhelix	InterPro:Thioredoxin-like_sf	UniParc:UPI0004EDE995	InterPro:YhbY_like_sf	SEG:seg	:

Description

BnaC02g36980D

Coordinates

chrLK031948:-:107744..112522

Molecular Weight (calculated)

82569.7 Da

IEP (calculated)

8.243

GRAVY (calculated)

-0.678

Length

732 amino acids

Sequence
(BLAST)

001: MTCLVLDLYS HLWKALKDTD VDAFVEDVLV NGKPWTSGIQ EELSGSFVFV CAHGSRDKRC GVCGPALIEK FEQEIGSRGL SDQIFVKPCS HIGGHKYAGN
101: LIVFSPDSAG NVSGHWYGYV TPDDVPAMLD QHIAKGEIIQ NLSRGQMRLR PEGEEVEKED ERKVPDGNSV VERESVEMRG FTGGCCQGAK GVSCCQEQTP
201: EPVKKETSVK QNWFKWLEKE EVLLVLGAAA VGAIATIAVA YSIYRRSGSS SPKPSNPSGI SLLFDNLPVL LVLVASLTEG QMFATRNLLR TCRRSLSSLL
301: HSDSSRNLVV SSNHVTSNLI LQPGSSSEGN SNSFQPLTHQ VFKGWSRAMS TARGRSMRSK VESRMRKESG KTLREIRRAK KLKKKLMTDE ERLIYNLKRA
401: KKKVALLLQK LKKYDLPELP SPVHDPELFT PEQIQAFKKI GFKNKNYVPV GVRGVFGGVV QNMHMHWKFH ETVQVCCDNF PKEKIKEMAT MIARLSGGVV
501: INIHNVKTII MFRGRNYRQP KNLIPVNTLT KRKALFKARF EQALESQKLN IKKTEQQLRR MGVNPEDPVA MASIQRVAST FFNAIDRKEG SPYEELDRFI
601: AEIEEAADKE WEEEEAAEQE ETGRIRYWNR EEFAGRSRDS SQGFRRNERD TRSQRRSNHS DDDDDECDQL DNEEDAPANY ISSSDEEEDE NRGVSASKQP
701: RFSNNNSSRE GTTINNSKTK SGKQKDEDWD SD

Best Arabidopsis Sequence Match ( AT3G27550.2 )
(BLAST)

001: MFVSRSLSRH CWRTCKWSLF SLLQSDSCVR NLVSSSNPVT SIGNSSEGNS NSFQPLMNQV FKGWSRGMST SRGRSMRSKV ESRMRKESGK TLREIRRAKK
101: LKKKLMTDEE RLIYNLKRAK KKVALLLQKL KKYDLPELPS PVHDPELFTS EQVQAFKKIG FKNKNYVPVG VRGVFGGVVQ NMHMHWKFHE TVQVCCDNFP
201: KEKIKEMASM IARLSGGVVI NIHNVKTIIM FRGRNYRQPK NLIPVNTLTK RKALFKARFE QALESQKLNI KKTEQQLRRM GVNPEDPVAM ASIHRVASTF
301: FNAIDKKEGT PYVFHGDKQS ERGTSVDNRE ESEPGDEDSD QEELDRFIAE IEEAADKEWE EEEAAEQEES GRIRYWNREE FAGRSRTPEL RSYGDASHGF
401: RRNDRDTHSQ RRPNDSDDDD DDGELDSEDD EIPKRFDRAR SSNTNTRRPR EDFKRRSPDP RPRPRAQVRS DDDVLSDLDN TMWDSEDEED APPANYISSS
501: DDDEDENRTV SASSSKQSRF RNNSSRDGIN NSKSKSGKQR DEDWDSD

Arabidopsis Description

RNA-binding CRS1 / YhbY (CRM) domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.