Factsheet for PGSC0003DMT400015748

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 5
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g047900.2.1	Tomato	mitochondrion, nucleus	94.93	88.31
CDY66660	Canola	plastid	52.16	61.5
Bra033017.1-P	Field mustard	plastid	54.22	59.96
CDX83707	Canola	mitochondrion, nucleus, plastid	56.1	59.33
CDY13722	Canola	mitochondrion, nucleus, plastid	55.53	59.2
Bra025285.1-P	Field mustard	plastid	57.04	57.25
AT3G27550.2	Thale cress	mitochondrion	57.6	56.12
GSMUA_Achr9P19780_001	Banana	nucleus	52.72	49.65
KRH56532	Soybean	mitochondrion	60.79	49.62
KRG93197	Soybean	mitochondrion	60.04	49.0
Os05t0145300-01	Rice	mitochondrion	50.47	48.04
HORVU1Hr1G019580.2	Barley	plastid	50.47	47.03
TraesCS1A01G108800.1	Wheat	mitochondrion	51.03	44.59
TraesCS1B01G108100.1	Wheat	mitochondrion	50.84	44.43
TraesCS1D01G090300.1	Wheat	mitochondrion	50.28	44.01
Zm00001d010884_P001	Maize	mitochondrion	51.78	42.79
Zm00001d024823_P001	Maize	mitochondrion	51.22	41.74
EES17695	Sorghum	plastid	52.35	40.73
CDY03983	Canola	cytosol	52.35	38.11
PGSC0003DMT400032783	Potato	mitochondrion	18.76	36.1
VIT_14s0066g00360.t01	Wine grape	nucleus	59.29	29.62
PGSC0003DMT400030768	Potato	mitochondrion	17.64	25.54
PGSC0003DMT400039655	Potato	mitochondrion, plastid	18.39	24.75
PGSC0003DMT400071187	Potato	mitochondrion	20.83	23.92
PGSC0003DMT400069622	Potato	cytosol	7.13	15.14
PGSC0003DMT400002898	Potato	mitochondrion	15.38	9.29
PGSC0003DMT400014644	Potato	plastid	13.88	8.98
PGSC0003DMT400056675	Potato	cytosol, plastid	13.7	8.92
PGSC0003DMT400003527	Potato	plastid	16.51	8.39
PGSC0003DMT400067878	Potato	plastid	12.38	8.23

Protein Annotations

MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR001890	InterPro:IPR035920	UniProt:M1A6I0	PFAM:PF01985	EnsemblPlantsGene:PGSC0003DMG400006153	PGSC:PGSC0003DMG400006153
EnsemblPlants:PGSC0003DMT400015748	PFscan:PS51295	PANTHER:PTHR31426	PANTHER:PTHR31426:SF4	InterPro:RNA-binding_CRM	SMART:SM01103
SUPFAM:SSF75471	UniParc:UPI00029696B6	InterPro:YhbY_like_sf	SEG:seg	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400006153]

Coordinates

chr7:-:44415236..44419076

Molecular Weight (calculated)

60985.1 Da

IEP (calculated)

8.384

GRAVY (calculated)

-1.108

Length

533 amino acids

Sequence
(BLAST)

001: MSSSGNMVSS PVKHVKVPIC NVGVRWMSGK SMRSRVAARM QNESSKTLRE IRRSKKLKLK LMTDEERLIY NLRRAKKKVA LLLQKLKKYE LPDLPSPRHD
101: PELLTPEQLQ AYKKIGFRNK NYVPVGVRGV FGGVVQNMHL HWKFHETVQV CCDNFPKEKI KEMSSMLARL SGGIVINIHN VKTIIMFRGR NYRQPKNLIP
201: VNTLTKRKAL FKARFEQALD SQKLNIKKIE QELRRKGVNP DDPAARASIQ RVASTFFNAI DKKEGSPYVF QEDYGTKLSH SSSVDEKHST AEDSDQEELD
301: DFIAQIEKAA DDEWAAEEEA EKEESGRIRY WNKEDIGGRF RRFGSDESDD ETGGRSSGRS KTYGRKMGDD DEQDDASEDD SELDDDDGRR THTYNAPFRH
401: PKYKTEKWQK GKSNRPMNEE GSRRNFDPYL KGTMASDRLS DLEEAMWASD DEGGQNSTQP SEYRSSSDEG EDYDKIATWE SDVDDAPGSR ASRGVGNSFR
501: TSGQGQMKKN EDTHESKRKV KSSKDMDETW DSD

Best Arabidopsis Sequence Match ( AT3G27550.1 )
(BLAST)

001: MNQVFKGWSR GMSTSRGRSM RSKVESRMRK ESGKTLREIR RAKKLKKKLM TDEERLIYNL KRAKKKVALL LQKLKKYDLP ELPSPVHDPE LFTSEQVQAF
101: KKIGFKNKNY VPVGVRGVFG GVVQNMHMHW KFHETVQVCC DNFPKEKIKE MASMIARLSG GVVINIHNVK TIIMFRGRNY RQPKNLIPVN TLTKRKALFK
201: ARFEQALESQ KLNIKKTEQQ LRRMGVNPED PVAMASIHRV ASTFFNAIDK KEGTPYVFHG DKQSERGTSV DNREESEPGD EDSDQEELDR FIAEIEEAAD
301: KEWEEEEAAE QEESGRIRYW NREEFAGRSR TPELRSYGDA SHGFRRNDRD THSQRRPNDS DDDDDDGELD SEDDEIPKRF DRARSSNTNT RRPREDFKRR
401: SPDPRPRPRA QVRSDDDVLS DLDNTMWDSE DEEDAPPANY ISSSDDDEDE NRTVSASSSK QSRFRNNSSR DGINNSKSKS GKQRDEDWDS D

Arabidopsis Description

RNA-binding CRS1 / YhbY (CRM) domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS8]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.