Factsheet for PGSC0003DMT400014644

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g119450.2.1	Tomato	nucleus	97.82	98.29
CDX95528	Canola	cytosol	38.59	67.23
CDX92233	Canola	cytosol	7.77	64.65
VIT_17s0000g03610.t01	Wine grape	plastid	62.38	61.93
TraesCS1A01G376400.1	Wheat	plastid	52.18	60.22
KRH39182	Soybean	plastid	57.28	59.67
KRH48490	Soybean	nucleus	56.67	59.04
Os05t0551900-00	Rice	plastid	55.46	58.44
CDY18518	Canola	plastid	57.04	58.31
GSMUA_Achr3P26360_001	Banana	plastid	54.13	58.07
CDY51940	Canola	plastid	58.74	57.69
Bra001704.1-P	Field mustard	plastid	58.62	57.5
KXG22496	Sorghum	plastid	55.83	57.43
CDX75965	Canola	plastid	58.5	57.38
Bra037586.1-P	Field mustard	plastid	56.8	57.28
Zm00001d038922_P001	Maize	extracellular	55.1	57.11
AT3G18390.1	Thale cress	plastid	58.5	56.84
KRH41639	Soybean	mitochondrion, plastid	50.0	56.67
TraesCS1D01G383500.1	Wheat	mitochondrion, plastid	53.4	56.48
HORVU1Hr1G083550.4	Barley	plasma membrane	53.03	56.39
TraesCS1B01G396800.2	Wheat	plastid	53.64	55.81
Bra022317.1-P	Field mustard	cytosol, endoplasmic reticulum	9.1	49.34
PGSC0003DMT400069622	Potato	cytosol	14.44	47.41
CDX95529	Canola	plastid	16.02	43.56
PGSC0003DMT400056675	Potato	cytosol, plastid	34.71	34.96
PGSC0003DMT400002898	Potato	mitochondrion	35.32	32.96
PGSC0003DMT400067878	Potato	plastid	30.83	31.67
PGSC0003DMT400032783	Potato	mitochondrion	9.47	28.16
PGSC0003DMT400003527	Potato	plastid	33.62	26.41
PGSC0003DMT400030768	Potato	mitochondrion	10.07	22.55
PGSC0003DMT400039655	Potato	mitochondrion, plastid	9.47	19.7
PGSC0003DMT400071187	Potato	mitochondrion	9.71	17.24
PGSC0003DMT400015748	Potato	nucleus, plastid	8.98	13.88

Protein Annotations

EntrezGene:102593632	Gene3D:3.30.110.60	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	UniProt:M1A4M2	PFAM:PF01985
EnsemblPlantsGene:PGSC0003DMG401005721	PGSC:PGSC0003DMG401005721	EnsemblPlants:PGSC0003DMT400014644	PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF4
InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI00029663A7	RefSeq:XP_006341605.1	InterPro:YhbY_like_sf
SEG:seg	:	:	:	:	:

Description

EMB1865 [Source:PGSC_GENE;Acc:PGSC0003DMG401005721]

Coordinates

chr3:+:58874641..58882684

Molecular Weight (calculated)

93665.1 Da

IEP (calculated)

6.822

GRAVY (calculated)

-0.650

Length

824 amino acids

Sequence
(BLAST)

001: MALSTAKFTQ LTPQLFSSFS TPSDRPPFFL FLRRTITAGN TRTNIPRKDN RKPYRDSNSS STPVKSNNSR SSTWLNKWPN TSPPVKHSSN SRTVESKTET
101: RYFDENTRVG TTAIDRIVLR LRNLGLGSDD EGEGEDEEEG NLKLDSSSTM QVNGEEEKLG DLLKRDWVRP DMILEESDDE GDTYLPWERS VEEEAVEVQR
201: GGKRTVKAPS LAELTIEDEE LRRLRRMGMT LRERINVPKA GVTGAVLEKI HHSWRKNELV RLKFHEVLAH DMRTGHEIVE RRTRGLVIWR AGSVMVVYRG
301: SNYEGPSSRS QSVNEEDNAL FVPDVSSDKS ITKDNKSFNP VIENRNQVHP NSVQSMTVEE SEFNRVLDGL GPRFEDWWGT GVLPVDADLL PQTIPGYKTP
401: FRLLPTGMRS RLTNAEMTNL RKIAKSLPCH FALGRNRNHQ GLAAAIVKLW EKSLVVKIAV KRGIQNTNNK LMSEELKMLT GGVLLLRNKY YIIFYRGKDF
501: VPPTVAAVLA ERQELTKQIQ DVEEQTRSGP AKVAPLTTDG QAVAGSLAEF YEAQARWGRE ISAEERERML KEAAMAKTAR VVKRLEHKFE ISQTKKLKAE
601: KILAKIVESW IPAGPSDDLE TITEEERVML RRVGLRMKSY LPLGIRGVFD GVIENMHLHW KHRELVKLIS KEKVLAFVEE TARLLEYESG GILVAIERVP
701: KGYALIFYRG KNYRRPISLR PRNLLTKAKA LKRRVALQRY EALSQHIAEL ETTIEQTKSK IVDFGKADIN TSNLEALDQF NHVSESLSED EDSSLESGDD
801: EDEDPEWEND DDSEYSSLED NDTG

Best Arabidopsis Sequence Match ( AT3G18390.1 )
(BLAST)

001: MALAPLNFTE MPLRSSLPLT SSSRYCSSPS LHALLFYSLG VKPSRQQIVR PFSSLRTSER SNNRSNNNRR LDQRNHKPTP PWIDKWPPSS SGAGGDHAGK
101: KGGENNGGDR IRSAEEEAEA KLRYLEKDKG QNAIERIVLR LRNLGLGSDD EDDVEDDEGG GINGGDVKPV TGEERLGDLL KREWVRPDMM LAEGEESEEE
201: DEVLLPWEKN EEEQAAERVV GEGGVAVMQK RRARAPSLAE LTVEDSELRR LRRDGMYLRV RINIPKAGLT QAVMEKIYDT WRKEELVRLK FHEVLARDMK
301: TAHEIVERRT GGMVIWRAGS VMVVYRGLDY KGPPVISNQM AGPKETLFVP DVSSAGDEAT NAKDNQSAPL VIKDPIIKNP IRKENMTEEE VEFNSLLDSL
401: GPRFQEWWGT GVLPVDADLL PPTIPGYKTP FRLLPTGMRS NLTNAEMTNL RKIGKTLPCH FALGRNRNHQ GLAAAILQIW EKSLIAKIAV KRGIQNTNNK
501: LMADEVKTLT GGVLLLRNKY YIVIYRGKDF LPSSVAATLA ERQELTKEIQ DVEERVRNRE IEAVQPVGDK VPAEAGTLAE FYEAQARWGK EITPDHREKM
601: IEEASRVANA RVVKRIQHKL NLAQSKFQRA EKLLSKIEAS MIPNGPDYDQ EVISEEERAM FRKVGLKMKA YLPIGIRGVF DGVIENMHLH WKHRELVKLI
701: SKQKNQAFVE ETARLLEYES GGVLVAIEKV PKGFALIYYR GKNYRRPISL RPRNLLTKAK ALKRSIAMQR HEALSQHISE LERTIEQMQS QLTSKNPSYS
801: ESEWENDEDD DDDEEEEKDD VEDNESDWDE TDGESAISSI EEADMSSR

Arabidopsis Description

EMB1865CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9LS51]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.