Factsheet for GSMUA_Achr3P26360_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95528	Canola	cytosol	39.19	63.64
TraesCS1A01G376400.1	Wheat	plastid	58.46	62.89
CDX92233	Canola	cytosol	7.94	61.62
Os05t0551900-00	Rice	plastid	62.5	61.38
HORVU1Hr1G083550.4	Barley	plasma membrane	61.2	60.65
Zm00001d038922_P001	Maize	extracellular	62.37	60.25
KXG22496	Sorghum	plastid	62.76	60.17
TraesCS1D01G383500.1	Wheat	mitochondrion, plastid	60.81	59.95
TraesCS1B01G396800.2	Wheat	plastid	61.46	59.6
VIT_17s0000g03610.t01	Wine grape	plastid	62.11	57.47
KRH48490	Soybean	nucleus	58.85	57.14
KRH39182	Soybean	plastid	58.59	56.89
KRH41639	Soybean	mitochondrion, plastid	52.86	55.85
CDY18518	Canola	plastid	57.55	54.84
Solyc03g119450.2.1	Tomato	nucleus	58.33	54.63
CDY51940	Canola	plastid	59.64	54.59
Bra001704.1-P	Field mustard	plastid	59.38	54.29
Bra037586.1-P	Field mustard	plastid	57.68	54.22
CDX75965	Canola	plastid	59.24	54.17
PGSC0003DMT400014644	Potato	plastid	58.07	54.13
AT3G18390.1	Thale cress	plastid	58.2	52.71
Bra022317.1-P	Field mustard	cytosol, endoplasmic reticulum	9.77	49.34
CDX95529	Canola	plastid	18.23	46.2
GSMUA_Achr8P05570_001	Banana	cytosol	18.1	40.41
GSMUA_Achr3P29330_001	Banana	cytosol, nucleus, plastid	37.89	34.28
GSMUA_Achr9P19190_001	Banana	plastid	32.55	31.85
GSMUA_Achr8P05580_001	Banana	plasma membrane	22.01	28.99
GSMUA_Achr10P...	Banana	plastid	34.64	26.63
GSMUA_Achr9P12700_001	Banana	mitochondrion	10.68	21.87
GSMUA_Achr2P05820_001	Banana	cytosol	9.11	21.41
GSMUA_Achr3P16860_001	Banana	mitochondrion	11.59	19.91
GSMUA_Achr9P19780_001	Banana	nucleus	10.29	13.96

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0009719	GO:GO:0009737	EnsemblPlantsGene:GSMUA_Achr3G26360_001	EnsemblPlants:GSMUA_Achr3P26360_001
EnsemblPlants:GSMUA_Achr3T26360_001	InterPro:IPR001890	InterPro:IPR035920	UniProt:M0SI02	PFAM:PF01985	PFscan:PS51295
PANTHER:PTHR31846	PANTHER:PTHR31846:SF4	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI00029680A7
InterPro:YhbY_like_sf	SEG:seg	:	:	:	:

Description

Putative Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr3G26360_001]

Coordinates

chr3:+:26230222..26237045

Molecular Weight (calculated)

86850.9 Da

IEP (calculated)

8.795

GRAVY (calculated)

-0.583

Length

768 amino acids

Sequence
(BLAST)

001: MALLPAAKIS ELSFHNPLPL CSRPSLVLSL SLIRGRFRRL IFSAAASSSS SLRLAESGGG DSDSRRSPRH RRNSRDDDDR QANANPRTPV RSGLPSAPWL
101: QQWAPPDPSP SPPSPERKPA EPDAGRGGAI ERIVYRLRNL GLDSDDDEYE GESTNEPTLC GDERLGELLE RSWNRPDKSL DMGRMLLPWE REDHGGFAKE
201: KDGRDAKRKR VRAPTLAELT IEDSELRRLR RLGIMLRERI TVPKAGVTQA ITEKIHDAWR KSELVRLKFH ETLANDMKTA HELVERRTGG LVIWRSGSVM
301: VVFRGSNYKQ EEAEYNGLLD GLGPRFVDWW GTGILPVDAD LLPQNIPGFK TPFRLLPTGM RSRLNNSEMT NLRKLARTLP SHFALGRNRH HHGLAAAILK
401: LWEKSLVVKI AVKRGIQNTN NKLMAEELKA LTGGILLLRN KYYIVIYRGK DFIPTTVATA LAEREELTKE IQDAEEQMRK SMIGEPCVDA LEEHAPVGTL
501: AEFLEAQARW GRDISSEECD AMKKEALRSE RTKLFKKIEQ KLSVAQAKKL RAEKLLAKIE ASMVPVNPSN DQETITDEER SVFRRIGLRM KAYLPLGIRG
601: VFDGVIENMH LHWKHRELVK LISKQKTLSF VEDTARLLEY ESGGILVAIE SVPKGFALIY YRGKNYQRPI SLRPRNLLTK AKALKRAVAI QRHEALSQHI
701: DALEKTIKQM KEEVGISEDE LIVADDWKTQ SDDDSCSSNM EYEDSSLDSE DDDDSVFYDS NVDEALRS

Best Arabidopsis Sequence Match ( AT3G18390.1 )
(BLAST)

001: MALAPLNFTE MPLRSSLPLT SSSRYCSSPS LHALLFYSLG VKPSRQQIVR PFSSLRTSER SNNRSNNNRR LDQRNHKPTP PWIDKWPPSS SGAGGDHAGK
101: KGGENNGGDR IRSAEEEAEA KLRYLEKDKG QNAIERIVLR LRNLGLGSDD EDDVEDDEGG GINGGDVKPV TGEERLGDLL KREWVRPDMM LAEGEESEEE
201: DEVLLPWEKN EEEQAAERVV GEGGVAVMQK RRARAPSLAE LTVEDSELRR LRRDGMYLRV RINIPKAGLT QAVMEKIYDT WRKEELVRLK FHEVLARDMK
301: TAHEIVERRT GGMVIWRAGS VMVVYRGLDY KGPPVISNQM AGPKETLFVP DVSSAGDEAT NAKDNQSAPL VIKDPIIKNP IRKENMTEEE VEFNSLLDSL
401: GPRFQEWWGT GVLPVDADLL PPTIPGYKTP FRLLPTGMRS NLTNAEMTNL RKIGKTLPCH FALGRNRNHQ GLAAAILQIW EKSLIAKIAV KRGIQNTNNK
501: LMADEVKTLT GGVLLLRNKY YIVIYRGKDF LPSSVAATLA ERQELTKEIQ DVEERVRNRE IEAVQPVGDK VPAEAGTLAE FYEAQARWGK EITPDHREKM
601: IEEASRVANA RVVKRIQHKL NLAQSKFQRA EKLLSKIEAS MIPNGPDYDQ EVISEEERAM FRKVGLKMKA YLPIGIRGVF DGVIENMHLH WKHRELVKLI
701: SKQKNQAFVE ETARLLEYES GGVLVAIEKV PKGFALIYYR GKNYRRPISL RPRNLLTKAK ALKRSIAMQR HEALSQHISE LERTIEQMQS QLTSKNPSYS
801: ESEWENDEDD DDDEEEEKDD VEDNESDWDE TDGESAISSI EEADMSSR

Arabidopsis Description

EMB1865CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9LS51]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.