Factsheet for VIT_17s0000g03610.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95528	Canola	cytosol	40.48	71.04
KRH39182	Soybean	plastid	60.72	63.72
CDX92233	Canola	cytosol	7.59	63.64
KRH48490	Soybean	nucleus	60.6	63.59
Solyc03g119450.2.1	Tomato	nucleus	62.17	62.93
CDY18518	Canola	plastid	60.6	62.41
PGSC0003DMT400014644	Potato	plastid	61.93	62.38
TraesCS1A01G376400.1	Wheat	plastid	53.61	62.32
GSMUA_Achr3P26360_001	Banana	plastid	57.47	62.11
Bra037586.1-P	Field mustard	plastid	60.6	61.57
Bra001704.1-P	Field mustard	plastid	61.81	61.07
CDX75965	Canola	plastid	61.81	61.07
CDY51940	Canola	plastid	61.57	60.91
Os05t0551900-00	Rice	plastid	57.35	60.87
KRH41639	Soybean	mitochondrion, plastid	52.77	60.25
AT3G18390.1	Thale cress	plastid	61.2	59.91
Zm00001d038922_P001	Maize	extracellular	57.11	59.62
KXG22496	Sorghum	plastid	57.35	59.43
TraesCS1D01G383500.1	Wheat	mitochondrion, plastid	54.94	58.54
HORVU1Hr1G083550.4	Barley	plasma membrane	54.58	58.45
TraesCS1B01G396800.2	Wheat	plastid	54.82	57.45
Bra022317.1-P	Field mustard	cytosol, endoplasmic reticulum	9.88	53.95
CDX95529	Canola	plastid	17.83	48.84
VIT_14s0006g02680.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid, vacuole	18.92	39.15
VIT_14s0006g02670.t01	Wine grape	mitochondrion	8.8	38.62
VIT_05s0020g04770.t01	Wine grape	plastid	37.59	34.59
VIT_11s0016g02100.t01	Wine grape	plastid	35.18	33.03
VIT_10s0092g00060.t01	Wine grape	nucleus	9.28	28.62
VIT_14s0066g01910.t01	Wine grape	cytosol	34.34	27.3
VIT_12s0035g00830.t01	Wine grape	nucleus	8.31	20.85
VIT_05s0102g00700.t01	Wine grape	plastid	10.12	20.19
VIT_14s0066g00360.t01	Wine grape	nucleus	9.52	7.4

Protein Annotations

EntrezGene:104882345	Gene3D:3.30.110.60	MapMan:35.1	EMBL:AM467313	ProteinID:CAN72582	ProteinID:CAN72582.1
ProteinID:CBI15459	ProteinID:CBI15459.3	ncoils:Coil	UniProt:D7SIZ8	EMBL:FN594950	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	PFAM:PF01985
PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF4	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471
UniParc:UPI0001BE0C7C	ArrayExpress:VIT_17s0000g03610	EnsemblPlantsGene:VIT_17s0000g03610	EnsemblPlants:VIT_17s0000g03610.t01	RefSeq:XP_010663604.1	InterPro:YhbY_like_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:3531072..3539930

Molecular Weight (calculated)

93742.4 Da

IEP (calculated)

6.649

GRAVY (calculated)

-0.667

Length

830 amino acids

Sequence
(BLAST)

001: MAFATAKLTE FPFTSHSSSL HFLFPKTPLS LLKPFSSLRT TDSNNLRNRK TKRSLYPWDH QNSRKSSNTN PNSSTKSWIN KWPSPNPSIE SEHKGIDSKG
101: RDGTESRYFD GRSGTSAIER IVLRLRNLGL GSDDEDKNEG EVESGDTMPV TGDEKLGDLL QRDWVRPDSM LIEDEDEDDM ILPWERGEER QEEEGDGRLK
201: RRAVRAPTLA ELTIEDEELR RLRRLGMTIR ERINVPKAGI TQAVLGKIHE KWRKEELVRL KFHEALAHDM KTAHEIVERR TGGLVTWRSG SVMVVFRGTN
301: YEGPPKPQPV DGEGDSLFVP DVSSVDNPAM RNDNNGGPTL EKGSLPVRNP VHAENMTEEE AEYNSLLDGL GPRFVDWWGT GVLPVDGDLL PQSIPGYKTP
401: LRILPTGMRP RLTNAEMTNL RKLAKSLPCH FALGRNRNHQ GLAAAIIKLW EKSIVVKIAV KPGIQNTNNK LMAEEIKNLT GGVLLLRNKY YIVIYRGKDF
501: LPTSVAAALS EREELTKHIQ VVEEKVRTGG AEAIPSGEDG VGQPLAGTLA EFYEAQARWG REISAEEHEK MIEEASRAKS ARVVKRIEHK LALAQAKKLR
601: AERLLAKIEA SMIPAGPSDD QETITDEERF MFRRLGLRMK AYLLLGVRGV FDGVIENMHL HWKHRELVKL ISKQKTLAFV EDTARLLEYE SGGILVAIER
701: VPKGYALIYY RGKNYRRPVS LRPRNLLTKA KALKRSVAMQ RHEALSQHIS ELERTIEQMK MEIGDSKDAE DKDSWSTEGH GQFDQVSESE DEASGMDSDA
801: DDVEDIDWKD DEESGISRFK NHDDLSSIKF

Best Arabidopsis Sequence Match ( AT3G18390.1 )
(BLAST)

001: MALAPLNFTE MPLRSSLPLT SSSRYCSSPS LHALLFYSLG VKPSRQQIVR PFSSLRTSER SNNRSNNNRR LDQRNHKPTP PWIDKWPPSS SGAGGDHAGK
101: KGGENNGGDR IRSAEEEAEA KLRYLEKDKG QNAIERIVLR LRNLGLGSDD EDDVEDDEGG GINGGDVKPV TGEERLGDLL KREWVRPDMM LAEGEESEEE
201: DEVLLPWEKN EEEQAAERVV GEGGVAVMQK RRARAPSLAE LTVEDSELRR LRRDGMYLRV RINIPKAGLT QAVMEKIYDT WRKEELVRLK FHEVLARDMK
301: TAHEIVERRT GGMVIWRAGS VMVVYRGLDY KGPPVISNQM AGPKETLFVP DVSSAGDEAT NAKDNQSAPL VIKDPIIKNP IRKENMTEEE VEFNSLLDSL
401: GPRFQEWWGT GVLPVDADLL PPTIPGYKTP FRLLPTGMRS NLTNAEMTNL RKIGKTLPCH FALGRNRNHQ GLAAAILQIW EKSLIAKIAV KRGIQNTNNK
501: LMADEVKTLT GGVLLLRNKY YIVIYRGKDF LPSSVAATLA ERQELTKEIQ DVEERVRNRE IEAVQPVGDK VPAEAGTLAE FYEAQARWGK EITPDHREKM
601: IEEASRVANA RVVKRIQHKL NLAQSKFQRA EKLLSKIEAS MIPNGPDYDQ EVISEEERAM FRKVGLKMKA YLPIGIRGVF DGVIENMHLH WKHRELVKLI
701: SKQKNQAFVE ETARLLEYES GGVLVAIEKV PKGFALIYYR GKNYRRPISL RPRNLLTKAK ALKRSIAMQR HEALSQHISE LERTIEQMQS QLTSKNPSYS
801: ESEWENDEDD DDDEEEEKDD VEDNESDWDE TDGESAISSI EEADMSSR

Arabidopsis Description

EMB1865CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9LS51]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.