Factsheet for VIT_10s0092g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032783	Potato	mitochondrion	73.23	71.12
KRH07419	Soybean	cytosol	61.34	63.22
CDY34540	Canola	mitochondrion	72.49	60.19
Bra034894.1-P	Field mustard	mitochondrion	72.12	60.06
CDY49592	Canola	mitochondrion	71.38	59.08
AT4G13070.1	Thale cress	mitochondrion	72.12	56.56
EES12394	Sorghum	mitochondrion	70.26	55.92
KRH41679	Soybean	mitochondrion	76.95	55.8
KRH60382	Soybean	mitochondrion	76.95	55.8
TraesCS7B01G128100.1	Wheat	mitochondrion	69.89	55.79
TraesCS7A01G219200.1	Wheat	mitochondrion	69.14	55.36
TraesCS7D01G222900.1	Wheat	mitochondrion	69.14	55.36
Zm00001d025706_P002	Maize	mitochondrion	69.14	55.03
Os06t0304500-01	Rice	mitochondrion	71.0	54.89
Solyc01g105090.2.1	Tomato	plastid	73.23	52.53
GSMUA_Achr9P12700_001	Banana	mitochondrion	71.0	50.93
KRH65957	Soybean	cytosol, mitochondrion, nucleus, plastid	64.68	34.87
VIT_05s0102g00700.t01	Wine grape	plastid	49.81	32.21
VIT_12s0035g00830.t01	Wine grape	nucleus	34.57	28.1
VIT_14s0006g02670.t01	Wine grape	mitochondrion	15.24	21.69
VIT_17s0000g03610.t01	Wine grape	plastid	28.62	9.28
VIT_14s0006g02680.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid, vacuole	13.75	9.23
VIT_14s0066g00360.t01	Wine grape	nucleus	35.69	9.0
VIT_11s0016g02100.t01	Wine grape	plastid	27.88	8.48
VIT_05s0020g04770.t01	Wine grape	plastid	27.88	8.31
VIT_14s0066g01910.t01	Wine grape	cytosol	26.02	6.7

Protein Annotations

EntrezGene:100252943	wikigene:100252943	Gene3D:3.30.110.60	MapMan:35.1	ProteinID:CBI38999	ProteinID:CBI38999.3
ncoils:Coil	UniProt:D7U8D5	EMBL:FN596741	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	EntrezGene:LOC100252943	wikigene:LOC100252943	PFAM:PF01985
PFscan:PS51295	PANTHER:PTHR31426	PANTHER:PTHR31426:SF3	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471
UniParc:UPI0001984272	ArrayExpress:VIT_10s0092g00060	EnsemblPlantsGene:VIT_10s0092g00060	EnsemblPlants:VIT_10s0092g00060.t01	RefSeq:XP_002270373	RefSeq:XP_002270373.1
InterPro:YhbY_like_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:-:11094872..11099296

Molecular Weight (calculated)

31686.7 Da

IEP (calculated)

10.458

GRAVY (calculated)

-0.935

Length

269 amino acids

Sequence
(BLAST)

001: MVGCGDALSK WARARYMSNT SIELKPDSDV VRFNIGELPG KTGTSKKGKK KMRRVKMSRK AKLNELRFYR LKAKKKMTSP NPEVRIRYKL EKAKRKEEWL
101: IEKLRKFDIP KAPTEAYDPE ILTEEEKFYL KRTGEKKKNY VPVGRRGVFG GVVLNMHLHW KKHETVKVIC KPCKVGQVYE YAEELARLSK GIMIDIKPNN
201: TIIFYRGKNY VQPQVMSPPD TLSKSKALEK YRYEQSLEHT SQFIEKLENE LEEYHKHLAQ YRKQKENQP

Best Arabidopsis Sequence Match ( AT4G13070.1 )
(BLAST)

001: MLALGYAKEI AQRFLRNPKW TSRFFLLHYQ SSNYSSYVKS RPFLQVQCKS ASFDVSQAQR WNLFAYDGLF SRRYLSNSTI ELRTDDNVVR FAFNNVSSSG
101: NNVVPTRKEK KWKRAKLSRK AKVNELRFYR LKAKKKMNSP NPEVRIRYKL EKAKRKEEWL IEKLRKYDVP KSPAEPYDPE SLTEEEQHYL KRTGEKRKNF
201: VLVGRRGVFG GVVLNLHLHW KKHETVKVIC KPCNKPGQVH EYAEELARLS KGIVIDVKPN NTIVLYRGKN YVRPEVMSPV DTLSKDKALE KYRYEQSLEH
301: TSEFIEKLEK ELEEYHKYVA RHKKKKDEEA EKKKEAVSKS KVV

Arabidopsis Description

At4g13070 [Source:UniProtKB/TrEMBL;Acc:Q67YJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.