Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400069622 | Potato | cytosol | 16.48 | 68.53 |
| Solyc08g044250.1.1 | Tomato | mitochondrion | 3.35 | 63.64 |
| CDY49049 | Canola | plastid | 53.45 | 57.17 |
| Bra039123.1-P | Field mustard | plastid | 53.93 | 56.81 |
| CDY37526 | Canola | plastid | 52.97 | 56.37 |
| PGSC0003DMT400003527 | Potato | plastid | 56.13 | 55.86 |
| AT3G01370.1 | Thale cress | plastid | 53.74 | 55.49 |
| GSMUA_Achr10P... | Banana | plastid | 51.72 | 54.05 |
| KRG93409 | Soybean | plastid | 52.39 | 53.26 |
| KRG93411 | Soybean | plastid | 49.81 | 50.29 |
| Solyc02g087250.2.1 | Tomato | extracellular | 57.76 | 47.82 |
| OQU81723 | Sorghum | plastid | 45.88 | 45.84 |
| Os04t0464800-00 | Rice | plastid | 37.45 | 45.62 |
| Zm00001d025633_P007 | Maize | plastid | 45.21 | 45.43 |
| Zm00001d025629_P007 | Maize | plastid | 45.21 | 45.43 |
| TraesCS2B01G346500.1 | Wheat | plastid | 45.5 | 43.78 |
| TraesCS2D01G327400.1 | Wheat | plastid | 45.5 | 43.78 |
| HORVU2Hr1G081140.2 | Barley | plastid | 45.59 | 43.75 |
| TraesCS2A01G335400.1 | Wheat | plastid | 45.69 | 42.67 |
| VIT_14s0006g02670.t01 | Wine grape | mitochondrion | 7.28 | 40.21 |
| VIT_14s0006g02680.t01 | Wine grape | cytosol, extracellular, mitochondrion, plastid, vacuole | 13.98 | 36.41 |
| VIT_17s0000g03610.t01 | Wine grape | plastid | 27.3 | 34.34 |
| VIT_05s0020g04770.t01 | Wine grape | plastid | 28.83 | 33.37 |
| VIT_11s0016g02100.t01 | Wine grape | plastid | 27.49 | 32.47 |
| VIT_10s0092g00060.t01 | Wine grape | nucleus | 6.7 | 26.02 |
| VIT_12s0035g00830.t01 | Wine grape | nucleus | 6.42 | 20.24 |
| VIT_05s0102g00700.t01 | Wine grape | plastid | 7.66 | 19.23 |
| VIT_14s0066g00360.t01 | Wine grape | nucleus | 9.0 | 8.81 |
Protein Annotations
| EntrezGene:100268128 | wikigene:100268128 | MapMan:16.12.2.1.2 | Gene3D:3.30.110.60 | ProteinID:CCB58550 | ProteinID:CCB58550.1 |
| ncoils:Coil | UniProt:F6HV32 | EMBL:FN596252 | GO:GO:0000372 | GO:GO:0000373 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009532 | GO:GO:0009536 |
| GO:GO:0009987 | GO:GO:0048037 | InterPro:IPR001890 | InterPro:IPR035920 | EntrezGene:LOC100268128 | wikigene:LOC100268128 |
| PFAM:PD010559 | PFAM:PF01985 | PFscan:PS51295 | PANTHER:PTHR31846 | PANTHER:PTHR31846:SF16 | InterPro:RNA-binding_CRM |
| SMART:SM01103 | SUPFAM:SSF75471 | TIGR:TC56606 | UniParc:UPI0001984CAA | ArrayExpress:VIT_14s0066g01910 | EnsemblPlantsGene:VIT_14s0066g01910 |
| EnsemblPlants:VIT_14s0066g01910.t01 | unigene:Vvi.5645 | RefSeq:XP_002275511 | RefSeq:XP_002275511.1 | RefSeq:XP_010660972.1 | InterPro:YhbY_like_sf |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr14:-:28196377..28207993
Molecular Weight (calculated)
117757.0 Da
IEP (calculated)
10.031
GRAVY (calculated)
-0.655
Length
1044 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTRFLERKEK QWELGLILFY SPNPMLLTLC RHHSPFPSPT PTFTSSPPSI SPSTFKTLNP KPSKFILRAS NPDAQTLPKT AIQRIAEKLR SLGYVDGDES
0101: RKVLSSDKPA NGSAGEIFVP LPNQLPKHRV GHTIDQSWSL PENPVPEPGT GGVITRFHEL RKEVKREKKL VRKEDERAPT LAELTLPEEE LRRLKGIGIQ
0201: IRKKLKVGKA GITEGIVNGI HERWRRAEVV KIRCEDICKL NMKRTHDILE RKTGGLVIWR SGSYIILYRG ANYKYPYFLS DNNLPNDSSH DASSDSQMNN
0301: EEHDGKEVCS SGKGDVKSAG PMPANKIAPL SLIQGVGYPT RVRFQLPGEA QLEEEADRLL DGLGPRFTDW WGYDPLPIDA DLLPAVVPGY RRPFRLLPYG
0401: LKPKLTNDEM TVLRRLGRPL PCHFALGRNR KLQGLAASMI KLWEKCEIAK IAVKRGVQNT NSEMMAEELK NLTGGTLLSR DREFIVFYRG KDFLPPAVSS
0501: AIEARRKYGI HRGKQKIDHH RLAINAEESE LGTSEHASDK DCDGTDDQKT NSLSKRRMLR SAEAVVERTN IKLSMALEKK ERAEKLLAEL EEAQIPQQPE
0601: IDKEGITEEE RYMLRKVGLR MKPFLLLGRR GIFDGTVENM HLHWKYRELV KIISNGRSIE DIHGVARTLE AESGGILVAV ERVSKGYAII MYRGKNYKRP
0701: ASLRPQTLLN KREALKRSLE AQRRESLKLH VLRLTRNIDE LKHQLVSRIK DKETNSKQLV DKSRLHLARE RYGADVILIH SSDGMDSSRD SLQTSHNDKR
0801: IDFPSMCDSD TDEANPEPSS ESVLKEIETN VLTDMNEEGE CTTCSEDLVS QGETSCYAIV NHEETMESSV KSSKNEFKPP VQRPVDTRSN EMPFRAAPLS
0901: NRERLLLRKQ ALRMKKRPVI AVGRSNIVTG VAKTIKAHFQ KHPLAIVNVK GRAKGTSVQE VIFKLEQATG AVLVSQEPSK VILYRGWGAR EENGRSYRMN
1001: RSDARKTSAG REGGPRPTVS PELRAAIRLE CGLKSNQDKG ADPN
0101: RKVLSSDKPA NGSAGEIFVP LPNQLPKHRV GHTIDQSWSL PENPVPEPGT GGVITRFHEL RKEVKREKKL VRKEDERAPT LAELTLPEEE LRRLKGIGIQ
0201: IRKKLKVGKA GITEGIVNGI HERWRRAEVV KIRCEDICKL NMKRTHDILE RKTGGLVIWR SGSYIILYRG ANYKYPYFLS DNNLPNDSSH DASSDSQMNN
0301: EEHDGKEVCS SGKGDVKSAG PMPANKIAPL SLIQGVGYPT RVRFQLPGEA QLEEEADRLL DGLGPRFTDW WGYDPLPIDA DLLPAVVPGY RRPFRLLPYG
0401: LKPKLTNDEM TVLRRLGRPL PCHFALGRNR KLQGLAASMI KLWEKCEIAK IAVKRGVQNT NSEMMAEELK NLTGGTLLSR DREFIVFYRG KDFLPPAVSS
0501: AIEARRKYGI HRGKQKIDHH RLAINAEESE LGTSEHASDK DCDGTDDQKT NSLSKRRMLR SAEAVVERTN IKLSMALEKK ERAEKLLAEL EEAQIPQQPE
0601: IDKEGITEEE RYMLRKVGLR MKPFLLLGRR GIFDGTVENM HLHWKYRELV KIISNGRSIE DIHGVARTLE AESGGILVAV ERVSKGYAII MYRGKNYKRP
0701: ASLRPQTLLN KREALKRSLE AQRRESLKLH VLRLTRNIDE LKHQLVSRIK DKETNSKQLV DKSRLHLARE RYGADVILIH SSDGMDSSRD SLQTSHNDKR
0801: IDFPSMCDSD TDEANPEPSS ESVLKEIETN VLTDMNEEGE CTTCSEDLVS QGETSCYAIV NHEETMESSV KSSKNEFKPP VQRPVDTRSN EMPFRAAPLS
0901: NRERLLLRKQ ALRMKKRPVI AVGRSNIVTG VAKTIKAHFQ KHPLAIVNVK GRAKGTSVQE VIFKLEQATG AVLVSQEPSK VILYRGWGAR EENGRSYRMN
1001: RSDARKTSAG REGGPRPTVS PELRAAIRLE CGLKSNQDKG ADPN
0001: MLLPLFHQQP LILAKTFPDR IFPPFLVPNT LVSRRNVSRA NSGIFCSSAS GRKTLPQSAI QRIAEKLRSL GFVEEKHDSP TRRITGEESG KNSPGEIFVP
0101: LPKQLPIHRV GHTIDTSWST PSYPVPKPGS GTAISRYHEL KRVWKKETEM ERKKEEKVPS LAELTLPPAE LRRLRTVGIR LTKKLKIGKA GITEGIVNGI
0201: HERWRTTEVV KIFCEDISRM NMKRTHDVLE TKTGGLVIWR SGSKILLYRG VNYQYPYFVS DRDLAHEAAS GASSMDQGVV DSREKQSIAE SSAPSITNKM
0301: VKPMLTQGVG SPDKVRFQLP GEVQLVEEAD RLLEGLGPRF TDWWAYDPLP VDGDLLPAVV PDYRRPFRLL PYGVSPKLTD DEMTTIRRLG RPLPCHFALG
0401: RNRNLQGLAV AIVKLWEKCE LAKIAVKRGV QNTNSELMAE ELKWLTGGTL ISRDKDFIVL YRGKDFLPSA VSSAIEERRR QTMIMENSSV HGNKLTENEE
0501: EIKPRAVKED IELEAKDQKD HIQTHQMKSR QRNSPEAILE KTSMKLSMAL EKKANAEKVL ADLENRESPQ LSDIDKEGIT NDEKYMLRKI GLKMKPFLLL
0601: GRRGVFDGTI ENMHLHWKYR ELVKIICNEY SIEAAHKVAE ILEAESGGIL VAVEMVSKGY AIIVYRGKNY ERPQCLRPQT LLSKREALKR SVEAQRRKSL
0701: KLHVLKLSNN IEELNRQLVE DSATNETWSD GESSNMMVEE ETENQHTEPE KAREKIELGY SSDLSVPSSG EENWEDDSEG EVDPLTTSSQ EYQEDESESA
0801: SSQRHEGNSL DSTANLSVFA ETGSANASSF HDRSLPHNSF LNANRKLPGS STGSGSQISA LRERKSENDG LVTDLSNRER LILRKQALKM KKRPPFAVGR
0901: SNVVTGLART LKMHFQKNPL AIVNVKGRAN GTSVQEVIAK LKEETGALLV SQEPSKVILY RGWGAEEEMK SFYPNNNVKS SINLPSTRSF VDDPPHVSPA
1001: LIEAIRLECG L
0101: LPKQLPIHRV GHTIDTSWST PSYPVPKPGS GTAISRYHEL KRVWKKETEM ERKKEEKVPS LAELTLPPAE LRRLRTVGIR LTKKLKIGKA GITEGIVNGI
0201: HERWRTTEVV KIFCEDISRM NMKRTHDVLE TKTGGLVIWR SGSKILLYRG VNYQYPYFVS DRDLAHEAAS GASSMDQGVV DSREKQSIAE SSAPSITNKM
0301: VKPMLTQGVG SPDKVRFQLP GEVQLVEEAD RLLEGLGPRF TDWWAYDPLP VDGDLLPAVV PDYRRPFRLL PYGVSPKLTD DEMTTIRRLG RPLPCHFALG
0401: RNRNLQGLAV AIVKLWEKCE LAKIAVKRGV QNTNSELMAE ELKWLTGGTL ISRDKDFIVL YRGKDFLPSA VSSAIEERRR QTMIMENSSV HGNKLTENEE
0501: EIKPRAVKED IELEAKDQKD HIQTHQMKSR QRNSPEAILE KTSMKLSMAL EKKANAEKVL ADLENRESPQ LSDIDKEGIT NDEKYMLRKI GLKMKPFLLL
0601: GRRGVFDGTI ENMHLHWKYR ELVKIICNEY SIEAAHKVAE ILEAESGGIL VAVEMVSKGY AIIVYRGKNY ERPQCLRPQT LLSKREALKR SVEAQRRKSL
0701: KLHVLKLSNN IEELNRQLVE DSATNETWSD GESSNMMVEE ETENQHTEPE KAREKIELGY SSDLSVPSSG EENWEDDSEG EVDPLTTSSQ EYQEDESESA
0801: SSQRHEGNSL DSTANLSVFA ETGSANASSF HDRSLPHNSF LNANRKLPGS STGSGSQISA LRERKSENDG LVTDLSNRER LILRKQALKM KKRPPFAVGR
0901: SNVVTGLART LKMHFQKNPL AIVNVKGRAN GTSVQEVIAK LKEETGALLV SQEPSKVILY RGWGAEEEMK SFYPNNNVKS SINLPSTRSF VDDPPHVSPA
1001: LIEAIRLECG L
Arabidopsis Description
CFM2CRM-domain containing factor CFM2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8L7C2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.