Factsheet for VIT_12s0035g00830.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P05820_001	Banana	cytosol	66.16	66.97
KRH69093	Soybean	mitochondrion	71.3	52.8
Solyc06g082990.2.1	Tomato	mitochondrion	70.09	50.22
PGSC0003DMT400071187	Potato	mitochondrion	69.79	49.78
CDY27892	Canola	plastid	64.35	48.85
Bra015127.1-P	Field mustard	plastid	63.14	48.05
CDY00840	Canola	plastid	63.75	47.74
AT3G25440.1	Thale cress	plastid	63.75	47.52
KRH71856	Soybean	nucleus	71.3	45.56
Os04t0492900-03	Rice	mitochondrion	62.24	43.01
TraesCS2B01G367400.1	Wheat	mitochondrion	60.42	41.58
TraesCS2A01G349000.1	Wheat	mitochondrion	60.12	41.29
TraesCS2A01G366200.1	Wheat	mitochondrion	58.91	40.88
Zm00001d003196_P001	Maize	mitochondrion	59.82	40.82
KXG26557	Sorghum	mitochondrion	61.63	40.64
HORVU2Hr1G084980.4	Barley	plastid	60.73	35.77
VIT_10s0092g00060.t01	Wine grape	nucleus	28.1	34.57
TraesCS2D01G347400.2	Wheat	mitochondrion, nucleus, plastid	59.52	34.2
VIT_05s0102g00700.t01	Wine grape	plastid	32.33	25.72
VIT_14s0006g02670.t01	Wine grape	mitochondrion	10.88	19.05
VIT_14s0066g00360.t01	Wine grape	nucleus	31.72	9.84
VIT_17s0000g03610.t01	Wine grape	plastid	20.85	8.31
VIT_05s0020g04770.t01	Wine grape	plastid	22.05	8.09
VIT_11s0016g02100.t01	Wine grape	plastid	20.24	7.58
VIT_14s0066g01910.t01	Wine grape	cytosol	20.24	6.42
VIT_14s0006g02680.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid, vacuole	7.25	5.99

Protein Annotations

EntrezGene:100252435	wikigene:100252435	MapMan:35.1	ProteinID:CBI29719	ProteinID:CBI29719.3	UniProt:D7TGU7
EMBL:FN595990	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890
InterPro:IPR035920	EntrezGene:LOC100252435	wikigene:LOC100252435	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31426
PANTHER:PTHR31426:SF5	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI00015CB771	ArrayExpress:VIT_12s0035g00830
EnsemblPlantsGene:VIT_12s0035g00830	EnsemblPlants:VIT_12s0035g00830.t01	RefSeq:XP_002263852	RefSeq:XP_002263852.1	RefSeq:XP_010658000.1	InterPro:YhbY_like_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:20407974..20411275

Molecular Weight (calculated)

38001.0 Da

IEP (calculated)

5.088

GRAVY (calculated)

-0.785

Length

331 amino acids

Sequence
(BLAST)

001: MTAEEKILYK LRKARRKEER LAEALTKIEP KESSETTHDP EILTPEEHFF FLKMGLKCKN YVPIGRRGIY QGVILNMHLH WKKHQTLQVV VKTFSPEEVK
101: EIAVELARLT GGIVLDIHEE NTIIMYRGKN YSQPPTEIMS PRITLSRKKA LDKSKYRDGL RAVRKYIPRL EGDLELLQAQ AKMQAENKTE AVEDFQNANI
201: DSINSQGISN LQPENSDKLR ELLAGNNESS EEESLTDSGT ESCSEALSDI FESDSDTDTK EKAEQLLYLN EFEKFPVESD GEPEDFEEHL RQISADSRKA
301: KSLEKDADLP QLDEVDQMFL RAASLLKKKR R

Best Arabidopsis Sequence Match ( AT3G25440.1 )
(BLAST)

001: MGFLTAAIRV STSAASMLLR RKSRQLGFLA SSSPLFSSFN SMNRTISSCN IVCKVLHKES LTRPMWNVSF LRSSSFHSTP ARETGDDDIS KSENSSSQDG
101: DSCTKLKRKK LKGKRAVVRW LKFFRWKKKK EFERMTSEEK ILNKLRKARK KEERLMETMK KLEPSESAET THDPEILTPE EHFYYLKMGL KCKNYVPVGR
201: RGIYQGVILN MHLHWKKHQT LQVVIKTFTP DEVKEIAVEL ARLTGGIVLD VHEGNTIIMY RGKNYVQPPT EIMSPRITLP RKKALDKSKC RDALRAVRKY
301: IPRLEQELQL LQAQAETKRD YTNVKVDDNQ ERSEELKKII ERSEECLEDE QEEDEAGLEL ATDSDLSDIF ETDSELEDAK TERPLFLEEF EKFPAINNRE
401: DEDFGDLGKA KSEGEENDDD KSPNFDEVDK MFLRAAFLLK KKRR

Arabidopsis Description

Uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q67XL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.