Factsheet for Os04t0492900-03

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G367400.1	Wheat	mitochondrion	75.57	75.26
TraesCS2A01G349000.1	Wheat	mitochondrion	75.16	74.69
TraesCS2A01G366200.1	Wheat	mitochondrion	74.11	74.42
KXG26557	Sorghum	mitochondrion	76.62	73.11
Zm00001d003196_P001	Maize	mitochondrion	73.28	72.37
GSMUA_Achr2P05820_001	Banana	cytosol	47.81	70.03
HORVU2Hr1G084980.4	Barley	plastid	76.2	64.95
VIT_12s0035g00830.t01	Wine grape	nucleus	43.01	62.24
TraesCS2D01G347400.2	Wheat	mitochondrion, nucleus, plastid	73.07	60.76
PGSC0003DMT400071187	Potato	mitochondrion	50.31	51.94
Solyc06g082990.2.1	Tomato	mitochondrion	49.69	51.52
KRH69093	Soybean	mitochondrion	47.39	50.78
CDY27892	Canola	plastid	45.93	50.46
CDY00840	Canola	plastid	46.35	50.23
AT3G25440.1	Thale cress	plastid	46.14	49.77
Bra015127.1-P	Field mustard	plastid	45.09	49.66
KRH71856	Soybean	nucleus	46.56	43.05
Os06t0304500-01	Rice	mitochondrion	24.63	33.91
Os01t0958400-02	Rice	mitochondrion	24.84	28.54
Os05t0145300-01	Rice	mitochondrion	22.55	19.29
Os05t0551900-00	Rice	plastid	19.21	11.76
Os11t0592400-00	Rice	plastid	19.21	10.38
Os08t0360100-01	Rice	plastid	15.45	10.21
Os04t0464800-00	Rice	plastid	16.28	9.1
Os09t0363100-01	Rice	plastid	17.75	8.98

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	EntrezGene:4336259	ProteinID:BAF15094.1	ProteinID:BAS89858.1	ProteinID:CAD41533.1
ProteinID:CAE02049.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR001890	InterPro:IPR035920	EnsemblPlantsGene:Os04g0492900	EnsemblPlants:Os04t0492900-03	PFAM:PF01985	PFscan:PS51295
PANTHER:PTHR31426	PANTHER:PTHR31426:SF5	UniProt:Q7XSB6	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471
UniParc:UPI00001B0D49	RefSeq:XP_015636442.1	InterPro:YhbY_like_sf	SEG:seg	:	:

Description

Similar to H0425E08.7 protein. (Os04t0492900-01);Similar to H0425E08.7 protein. (Os04t0492900-02);RNA-binding, CRM domain domain containing protein. (Os04t0492900-03)

Coordinates

chr4:+:24644199..24647448

Molecular Weight (calculated)

55205.6 Da

IEP (calculated)

9.210

GRAVY (calculated)

-0.822

Length

479 amino acids

Sequence
(BLAST)

001: MGSRVLLLRR MEKGWRPMSR ALYPSPGSTS VAPPHELRAP RRCSPSYTSH KVFHRDVGFF SGWQSYNLQI YCCIHTSRPV NSQNHTIAEP QQKQEDVALV
101: DESGRPKAKR KKLKGRRAVT RFLKSLRWKK KREFQRMTAE EKILYKLKLA RNKEERLVAA LTKIEPDDPS EPTHDPEVLT PEEHFYFLKM GQKSKNYVPV
201: GRRGIYQGVI LNMHLHWKKH QTLQVIVKTF TPDEVKEIAS ELARLSGGIV LDIQEGNTII MYRGKNYAQP PPEIMSPKVT LPRKKALDKS KYRERLRALR
301: RYIPRLEQEL VDLHAQMKLA RDYKGQNAAE DITCISDSVN STSAKEYSSC SVRKRSVSDL LSESIEGSGR LEDENYEVSA DSASESITYS ESEDLSDIFE
401: TDSEEEQVQE SKEQPLYLDK LDKFPSENND NEPDDFEEHL RKIASLSDRT DSSAKELKVS ELDEIDKIFL RASSLLKKR

Best Arabidopsis Sequence Match ( AT3G25440.1 )
(BLAST)

001: MGFLTAAIRV STSAASMLLR RKSRQLGFLA SSSPLFSSFN SMNRTISSCN IVCKVLHKES LTRPMWNVSF LRSSSFHSTP ARETGDDDIS KSENSSSQDG
101: DSCTKLKRKK LKGKRAVVRW LKFFRWKKKK EFERMTSEEK ILNKLRKARK KEERLMETMK KLEPSESAET THDPEILTPE EHFYYLKMGL KCKNYVPVGR
201: RGIYQGVILN MHLHWKKHQT LQVVIKTFTP DEVKEIAVEL ARLTGGIVLD VHEGNTIIMY RGKNYVQPPT EIMSPRITLP RKKALDKSKC RDALRAVRKY
301: IPRLEQELQL LQAQAETKRD YTNVKVDDNQ ERSEELKKII ERSEECLEDE QEEDEAGLEL ATDSDLSDIF ETDSELEDAK TERPLFLEEF EKFPAINNRE
401: DEDFGDLGKA KSEGEENDDD KSPNFDEVDK MFLRAAFLLK KKRR

Arabidopsis Description

Uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q67XL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.