Factsheet for Solyc06g082990.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1
nucleus 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071187	Potato	mitochondrion	95.02	94.61
VIT_12s0035g00830.t01	Wine grape	nucleus	50.22	70.09
GSMUA_Achr2P05820_001	Banana	cytosol	44.37	62.69
KRH69093	Soybean	mitochondrion	55.19	57.05
CDY00840	Canola	plastid	52.38	54.75
CDY27892	Canola	plastid	51.52	54.59
Bra015127.1-P	Field mustard	plastid	50.65	53.79
AT3G25440.1	Thale cress	plastid	51.52	53.6
Os04t0492900-03	Rice	mitochondrion	51.52	49.69
Zm00001d003196_P001	Maize	mitochondrion	51.52	49.07
KRH71856	Soybean	nucleus	54.76	48.84
KXG26557	Sorghum	mitochondrion	52.16	48.01
TraesCS2B01G367400.1	Wheat	mitochondrion	49.78	47.82
TraesCS2A01G349000.1	Wheat	mitochondrion	49.57	47.51
TraesCS2A01G366200.1	Wheat	mitochondrion	48.92	47.38
HORVU2Hr1G084980.4	Barley	plastid	50.22	41.28
TraesCS2D01G347400.2	Wheat	mitochondrion, nucleus, plastid	50.0	40.1
Solyc09g005270.2.1	Tomato	mitochondrion	24.89	31.42
Solyc01g105090.2.1	Tomato	plastid	24.03	29.6
Solyc08g044250.1.1	Tomato	mitochondrion	3.46	29.09
Solyc12g014280.1.1	Tomato	mitochondrion, plastid	23.16	25.91
Solyc07g047900.2.1	Tomato	mitochondrion, nucleus	25.11	20.24
Solyc09g083350.2.1	Tomato	mitochondrion	20.56	10.76
Solyc03g119450.2.1	Tomato	nucleus	17.53	9.88
Solyc07g039500.2.1	Tomato	plastid	16.88	9.61
Solyc02g086200.1.1	Tomato	plastid	15.37	8.85
Solyc02g087250.2.1	Tomato	extracellular	19.05	6.98

Protein Annotations

EnsemblPlants:Solyc06g082990.2.1	EnsemblPlantsGene:Solyc06g082990.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf	ncoils:Coil	PANTHER:PTHR31426
PANTHER:PTHR31426:SF5	PFAM:PF01985	PFscan:PS51295	SEG:seg	SMART:SM01103	SUPFAM:SSF75471
UniParc:UPI0002765BDC	UniProt:K4CAF4	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr6:-:48574363..48581826

Molecular Weight (calculated)

53614.0 Da

IEP (calculated)

7.823

GRAVY (calculated)

-0.784

Length

462 amino acids

Sequence
(BLAST)

001: MLWRGFFFPA TLCKSRQLQH LVCCRFIFEP VLPHSVPQQT SLLNAVCKVF ERGVTVGPRL VVQKWDFGLI NSGRYYCTAG KAGETSNGGG NDAVAESSGE
101: FKEDKIKRKK LKGKRQVVKW LKFFRWKKKK EFQRMTAEER ILFKLRKARK KEERLVEALR KVEPKEIPEA THDPEILTPE EHFYFLKMGE KCKNYVPVGR
201: RGIYQGVILN MHLHWKKHQT LKVVVKTFSP EEVKEIAVEL ARLSGGIVLD IQDDDTIIMY RGKNYSQPPT EIMSPRSTLS RKKALDKSKY RDSLRAVERY
301: IPRLEQDLEL LRLQAENKTD APDKNQEAGF EKFQPEHRSD QQIEASDKLK RIMIENEEQS EENDSMVDTD ICSDSEDLSD IFETDSEEEH EEKAEEPLYL
401: DVFEKFPVQS NGDAQDFEEH LRQISSNSRK EKSPGKDVDT PGLDEVDKII LQATSLLKKQ KR

Best Arabidopsis Sequence Match ( AT3G25440.1 )
(BLAST)

001: MGFLTAAIRV STSAASMLLR RKSRQLGFLA SSSPLFSSFN SMNRTISSCN IVCKVLHKES LTRPMWNVSF LRSSSFHSTP ARETGDDDIS KSENSSSQDG
101: DSCTKLKRKK LKGKRAVVRW LKFFRWKKKK EFERMTSEEK ILNKLRKARK KEERLMETMK KLEPSESAET THDPEILTPE EHFYYLKMGL KCKNYVPVGR
201: RGIYQGVILN MHLHWKKHQT LQVVIKTFTP DEVKEIAVEL ARLTGGIVLD VHEGNTIIMY RGKNYVQPPT EIMSPRITLP RKKALDKSKC RDALRAVRKY
301: IPRLEQELQL LQAQAETKRD YTNVKVDDNQ ERSEELKKII ERSEECLEDE QEEDEAGLEL ATDSDLSDIF ETDSELEDAK TERPLFLEEF EKFPAINNRE
401: DEDFGDLGKA KSEGEENDDD KSPNFDEVDK MFLRAAFLLK KKRR

Arabidopsis Description

Uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q67XL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.