Factsheet for Solyc01g105090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032783	Potato	mitochondrion	71.2	96.39
VIT_10s0092g00060.t01	Wine grape	nucleus	52.53	73.23
KRH07419	Soybean	cytosol	41.87	60.15
CDY34540	Canola	mitochondrion	49.33	57.1
CDY49592	Canola	mitochondrion	49.33	56.92
Bra034894.1-P	Field mustard	mitochondrion	48.8	56.66
Zm00001d025706_P002	Maize	mitochondrion	50.13	55.62
EES12394	Sorghum	mitochondrion	49.87	55.33
TraesCS7B01G128100.1	Wheat	mitochondrion	49.07	54.6
Os06t0304500-01	Rice	mitochondrion	50.67	54.6
TraesCS7A01G219200.1	Wheat	mitochondrion	48.8	54.46
TraesCS7D01G222900.1	Wheat	mitochondrion	48.27	53.87
AT4G13070.1	Thale cress	mitochondrion	49.07	53.64
KRH60382	Soybean	mitochondrion	52.53	53.1
KRH41679	Soybean	mitochondrion	51.47	52.02
GSMUA_Achr9P12700_001	Banana	mitochondrion	51.47	51.47
Solyc08g044250.1.1	Tomato	mitochondrion	5.33	36.36
Solyc09g005270.2.1	Tomato	mitochondrion	33.6	34.43
KRH65957	Soybean	cytosol, mitochondrion, nucleus, plastid	43.73	32.87
Solyc12g014280.1.1	Tomato	mitochondrion, plastid	32.27	29.3
Solyc06g082990.2.1	Tomato	mitochondrion	29.6	24.03
Solyc07g047900.2.1	Tomato	mitochondrion, nucleus	27.47	17.98
Solyc03g119450.2.1	Tomato	nucleus	22.67	10.37
Solyc07g039500.2.1	Tomato	plastid	22.4	10.34
Solyc02g086200.1.1	Tomato	plastid	21.07	9.85
Solyc09g083350.2.1	Tomato	mitochondrion	21.33	9.06
Solyc02g087250.2.1	Tomato	extracellular	21.33	6.34

Protein Annotations

EnsemblPlants:Solyc01g105090.2.1	EnsemblPlantsGene:Solyc01g105090.2	Gene3D:3.30.110.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf	ncoils:Coil
PANTHER:PTHR31426	PANTHER:PTHR31426:SF3	PFAM:PF01985	PFscan:PS51295	SEG:seg	SMART:SM01103
SUPFAM:SSF75471	UniParc:UPI0002768D81	UniProt:K4B279	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1:+:93360787..93363677

Molecular Weight (calculated)

43689.4 Da

IEP (calculated)

10.678

GRAVY (calculated)

-0.699

Length

375 amino acids

Sequence
(BLAST)

001: MRAAEQPVLA AVKIMLAISK RMKNSSIRSW GFIFRPSDIN CVSREAPHMF CYSGQSVPNP YLPKATSLMR FLGHSNSSIS RNYHQMRLIP KLSREDPALN
101: TLLLPISLSS GSREIVLKFL HARRFSSPSI ELNTEKGVVR FRFGQEIGKR GGQTQVKRVV KKFKMSKKAK LNELRFYRLK AKKKMRSPNP EVRIRYKLEK
201: AKRKEAWLIE KLRNFEVPKA PDEPHDPEIL TEEEKFYLKR TGEKKKNYAP VGRRGVFGGV VLNMHLHWKK HETVKVVCRP CKPGQIHEYA AELTRLSRGT
301: VIDIKPDNTI IFYRGKNYVQ PDVMSPPDTL SKDKALEKYR YEQSLEHTSQ FIEKMEKELV EYHEYLAQKR KQENS

Best Arabidopsis Sequence Match ( AT4G13070.1 )
(BLAST)

001: MLALGYAKEI AQRFLRNPKW TSRFFLLHYQ SSNYSSYVKS RPFLQVQCKS ASFDVSQAQR WNLFAYDGLF SRRYLSNSTI ELRTDDNVVR FAFNNVSSSG
101: NNVVPTRKEK KWKRAKLSRK AKVNELRFYR LKAKKKMNSP NPEVRIRYKL EKAKRKEEWL IEKLRKYDVP KSPAEPYDPE SLTEEEQHYL KRTGEKRKNF
201: VLVGRRGVFG GVVLNLHLHW KKHETVKVIC KPCNKPGQVH EYAEELARLS KGIVIDVKPN NTIVLYRGKN YVRPEVMSPV DTLSKDKALE KYRYEQSLEH
301: TSEFIEKLEK ELEEYHKYVA RHKKKKDEEA EKKKEAVSKS KVV

Arabidopsis Description

At4g13070 [Source:UniProtKB/TrEMBL;Acc:Q67YJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.