Factsheet for Zm00001d025706_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

mitochondrion: 17105995
nucleus: 17105995

gfp PMID: 17105995 doi

A Barkan, L Klipcan, O Ostersetzer, T Kawamura, Y Asakura, KP Watkins

Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403-1229, USA. , Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403-1229, USA. abarkan@molbio.uoregon.edu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12394	Sorghum	mitochondrion	92.31	92.31
Os06t0304500-01	Rice	mitochondrion	78.11	75.86
TraesCS7A01G219200.1	Wheat	mitochondrion	73.67	74.11
TraesCS7B01G128100.1	Wheat	mitochondrion	73.67	73.89
TraesCS7D01G222900.1	Wheat	mitochondrion	73.37	73.81
VIT_10s0092g00060.t01	Wine grape	nucleus	55.03	69.14
PGSC0003DMT400032783	Potato	mitochondrion	53.85	65.7
KRH07419	Soybean	cytosol	44.67	57.85
CDY34540	Canola	mitochondrion	54.44	56.79
Bra034894.1-P	Field mustard	mitochondrion	53.85	56.35
CDY49592	Canola	mitochondrion	53.85	56.0
AT4G13070.1	Thale cress	mitochondrion	55.62	54.81
GSMUA_Achr9P12700_001	Banana	mitochondrion	60.06	54.13
KRH60382	Soybean	mitochondrion	57.69	52.56
KRH41679	Soybean	mitochondrion	56.51	51.48
Solyc01g105090.2.1	Tomato	plastid	55.62	50.13
Zm00001d042043_P001	Maize	mitochondrion	40.53	34.77
KRH65957	Soybean	cytosol, mitochondrion, nucleus, plastid	47.04	31.86
Zm00001d003196_P001	Maize	mitochondrion	34.91	24.33
Zm00001d010884_P001	Maize	mitochondrion	28.7	15.04
Zm00001d024823_P001	Maize	mitochondrion	28.7	14.83
Zm00001d038922_P001	Maize	extracellular	26.92	11.45
Zm00001d007572_P001	Maize	plastid	25.74	10.33
Zm00001d032373_P004	Maize	plastid	21.6	9.4
Zm00001d020230_P006	Maize	plastid	23.96	8.4
Zm00001d025629_P007	Maize	plastid	21.89	7.12
Zm00001d025633_P007	Maize	plastid	21.89	7.12

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	EntrezGene:732768	ProteinID:AQK44311.1	ProteinID:AQK44312.1	ProteinID:AQK44314.1
ProteinID:AQK44316.1	ProteinID:AQK44317.1	ProteinID:AQK44321.1	ncoils:Coil	EMBL:DQ402046	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	PFAM:PF01985
PFscan:PS51295	PANTHER:PTHR31426	PANTHER:PTHR31426:SF3	UniProt:Q208U9	InterPro:RNA-binding_CRM	SMART:SM01103
SUPFAM:SSF75471	UniParc:UPI00006DEC29	InterPro:YhbY_like_sf	EnsemblPlantsGene:Zm00001d025706	EnsemblPlants:Zm00001d025706_P002	EnsemblPlants:Zm00001d025706_T002
SEG:seg	:	:	:	:	:

Description

CRM family member6RNA-binding CRS1 / YhbY (CRM) domain protein

Coordinates

chr10:-:126880549..126888824

Molecular Weight (calculated)

39530.0 Da

IEP (calculated)

10.646

GRAVY (calculated)

-0.888

Length

338 amino acids

Sequence
(BLAST)

001: MAALAPWILR RRPVRSVASL VSIRDSWHRR CGSSSSYPSA SFKCLWGWFG PEAHGRRRPW FQQPVRCGST TITLDTDGKF ARFGVGDMGV TKQKWRQQPP
101: PKKKMSRKAK VNQLKWYRLK AKKKMKSPNP EVRIRYKLEK AKRKEEWLIE KLRKYEVPRT PEPVHDPEIL TEEEKFYLKR TGEKKKNYVP VGRRGVFGGV
201: VLNMHLHWKK HETVKVVCKP CRPGQVYEYA EELTRLSKGT VIDIKPNNTI MFYRGKNYVQ PKVMSPPETL SKQKALEKYR YLQSLEHTSQ FIEKLEKELE
301: DYKKHVALFK NHNKGVAIEK ISNEDTTVDD PATTSDSK

Best Arabidopsis Sequence Match ( AT4G13070.1 )
(BLAST)

001: MLALGYAKEI AQRFLRNPKW TSRFFLLHYQ SSNYSSYVKS RPFLQVQCKS ASFDVSQAQR WNLFAYDGLF SRRYLSNSTI ELRTDDNVVR FAFNNVSSSG
101: NNVVPTRKEK KWKRAKLSRK AKVNELRFYR LKAKKKMNSP NPEVRIRYKL EKAKRKEEWL IEKLRKYDVP KSPAEPYDPE SLTEEEQHYL KRTGEKRKNF
201: VLVGRRGVFG GVVLNLHLHW KKHETVKVIC KPCNKPGQVH EYAEELARLS KGIVIDVKPN NTIVLYRGKN YVRPEVMSPV DTLSKDKALE KYRYEQSLEH
301: TSEFIEKLEK ELEEYHKYVA RHKKKKDEEA EKKKEAVSKS KVV

Arabidopsis Description

At4g13070 [Source:UniProtKB/TrEMBL;Acc:Q67YJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.