CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
plasma membrane 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025706_P002	Maize	mitochondrion	92.31	92.31
TraesCS7D01G222900.1	Wheat	mitochondrion	73.96	74.4
TraesCS7A01G219200.1	Wheat	mitochondrion	73.96	74.4
TraesCS7B01G128100.1	Wheat	mitochondrion	73.96	74.18
Os06t0304500-01	Rice	mitochondrion	76.04	73.85
VIT_10s0092g00060.t01	Wine grape	nucleus	55.92	70.26
PGSC0003DMT400032783	Potato	mitochondrion	53.85	65.7
KRH07419	Soybean	cytosol	45.56	59.0
CDY34540	Canola	mitochondrion	54.73	57.1
Bra034894.1-P	Field mustard	mitochondrion	54.14	56.66
CDY49592	Canola	mitochondrion	53.85	56.0
AT4G13070.1	Thale cress	mitochondrion	55.92	55.1
GSMUA_Achr9P12700_001	Banana	mitochondrion	59.47	53.6
KRH60382	Soybean	mitochondrion	58.28	53.1
KRH41679	Soybean	mitochondrion	57.1	52.02
Solyc01g105090.2.1	Tomato	plastid	55.33	49.87
EES02081	Sorghum	mitochondrion	40.83	34.07
KRH65957	Soybean	cytosol, mitochondrion, nucleus, plastid	47.63	32.26
KXG26557	Sorghum	mitochondrion	34.62	23.31
EES17695	Sorghum	plastid	29.59	14.6
KXG22496	Sorghum	plastid	26.04	10.99
EES13710	Sorghum	plastid	21.6	10.03
OQU83762	Sorghum	cytosol, nucleus, plastid	23.96	9.47
EER96635	Sorghum	plastid	24.26	8.52
OQU81723	Sorghum	plastid	22.78	7.37

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	EntrezGene:8073672	UniProt:C5YAU4	ncoils:Coil	EnsemblPlants:EES12394
ProteinID:EES12394	ProteinID:EES12394.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR001890	InterPro:IPR035920	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31426	PANTHER:PTHR31426:SF3
InterPro:RNA-binding_CRM	SMART:SM01103	EnsemblPlantsGene:SORBI_3006G123900	SUPFAM:SSF75471	UniParc:UPI0001A870D6	RefSeq:XP_002448066.1
InterPro:YhbY_like_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:48952211..48956370

Molecular Weight (calculated)

39429.6 Da

IEP (calculated)

10.555

GRAVY (calculated)

-0.882

Length

338 amino acids

Sequence
(BLAST)

001: MAALVPWILR RRPVRSATSL VSIRDSWHRM CGSSSSSPAA SFECLWGWFG PEEHRRRWRP WFQQPVRCGS TGITLDTDGK FARFGVGDTG VAKQKGRQQS
101: PPKKKMSRKA KVNQLKWYRL KAKKKMKSPN PEVRIRYKLE KAKRKEEWLI EKLRKYDVPR TPEPVHDPEI LTEEEKFYLK RTGEKKKNYV PVGRRGVFGG
201: VVLNMHLHWK NHETVKVVCK PCRPGQVYEY AEELTRLSKG TIIDIKPNNT IMFYRGKNYV QPQVMSPPDT LSKQKALEKY RYLQSLEHTS QFIEKLEKEL
301: EDYKKHVALF KNREGVASEK ISNEHSTVDD PATTLDSK

Best Arabidopsis Sequence Match ( AT4G13070.1 )
(BLAST)

001: MLALGYAKEI AQRFLRNPKW TSRFFLLHYQ SSNYSSYVKS RPFLQVQCKS ASFDVSQAQR WNLFAYDGLF SRRYLSNSTI ELRTDDNVVR FAFNNVSSSG
101: NNVVPTRKEK KWKRAKLSRK AKVNELRFYR LKAKKKMNSP NPEVRIRYKL EKAKRKEEWL IEKLRKYDVP KSPAEPYDPE SLTEEEQHYL KRTGEKRKNF
201: VLVGRRGVFG GVVLNLHLHW KKHETVKVIC KPCNKPGQVH EYAEELARLS KGIVIDVKPN NTIVLYRGKN YVRPEVMSPV DTLSKDKALE KYRYEQSLEH
301: TSEFIEKLEK ELEEYHKYVA RHKKKKDEEA EKKKEAVSKS KVV

Arabidopsis Description

At4g13070 [Source:UniProtKB/TrEMBL;Acc:Q67YJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.