Factsheet for Solyc08g044250.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
extracellular 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g110190.2.1
Solyc03g113740.2.1
Solyc07g007790.2.1
Solyc10g054080.1.1
Solyc11g044880.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01370.1	Solyc03g113740.2.1	AT3G48150.1	21798944
AT3G01370.1	Solyc01g110190.2.1	AT4G39050.1	21798944
AT3G01370.1	Solyc10g054080.1.1	AT4G39050.1	21798944
AT3G01370.1	Solyc11g044880.1.1	AT4G39050.1	21798944
AT3G01370.1	Solyc07g007790.2.1	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g005270.2.1	Tomato	mitochondrion	36.36	5.46
Solyc01g105090.2.1	Tomato	plastid	36.36	5.33
Solyc12g014280.1.1	Tomato	mitochondrion, plastid	32.73	4.36
Os04t0464800-00	Rice	plastid	61.82	3.97
Solyc09g083350.2.1	Tomato	mitochondrion	61.82	3.85
Solyc07g039500.2.1	Tomato	plastid	56.36	3.82
Solyc03g119450.2.1	Tomato	nucleus	54.55	3.66
GSMUA_Achr10P...	Banana	plastid	65.45	3.6
CDY49049	Canola	plastid	63.64	3.59
CDY37526	Canola	plastid	63.64	3.57
Bra039123.1-P	Field mustard	plastid	63.64	3.53
Solyc06g082990.2.1	Tomato	mitochondrion	29.09	3.46
AT3G01370.1	Thale cress	plastid	63.64	3.46
VIT_14s0066g01910.t01	Wine grape	cytosol	63.64	3.35
Solyc07g047900.2.1	Tomato	mitochondrion, nucleus	34.55	3.32
KRG93409	Soybean	plastid	61.82	3.31
Zm00001d025629_P007	Maize	plastid	61.82	3.27
Zm00001d025633_P007	Maize	plastid	61.82	3.27
OQU81723	Sorghum	plastid	61.82	3.25
Solyc02g086200.1.1	Tomato	plastid	47.27	3.24
KRG93411	Soybean	plastid	60.0	3.19
TraesCS2B01G346500.1	Wheat	plastid	60.0	3.04
TraesCS2D01G327400.1	Wheat	plastid	60.0	3.04
HORVU2Hr1G081140.2	Barley	plastid	60.0	3.03
Solyc02g087250.2.1	Tomato	extracellular	67.27	2.93
TraesCS2A01G335400.1	Wheat	plastid	58.18	2.86

Protein Annotations

EnsemblPlants:Solyc08g044250.1.1	EnsemblPlantsGene:Solyc08g044250.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf	PANTHER:PTHR31846	PANTHER:PTHR31846:SF16
PFAM:PF01985	PFscan:PS51295	SUPFAM:SSF75471	UniParc:UPI000276C451	UniProt:K4CK84	MapMan:35.2

Description

No Description!

Coordinates

chr8:-:22453920..22454171

Molecular Weight (calculated)

6745.8 Da

IEP (calculated)

11.167

GRAVY (calculated)

-0.029

Length

55 amino acids

Sequence
(BLAST)

1: MLRKIGLRMK SFILLGRRGF IDGTDEKMHL HWKYRELVKV IMLPICVKKI RNYWL

Best Arabidopsis Sequence Match ( AT3G01370.1 )
(BLAST)

0001: MLLPLFHQQP LILAKTFPDR IFPPFLVPNT LVSRRNVSRA NSGIFCSSAS GRKTLPQSAI QRIAEKLRSL GFVEEKHDSP TRRITGEESG KNSPGEIFVP
0101: LPKQLPIHRV GHTIDTSWST PSYPVPKPGS GTAISRYHEL KRVWKKETEM ERKKEEKVPS LAELTLPPAE LRRLRTVGIR LTKKLKIGKA GITEGIVNGI
0201: HERWRTTEVV KIFCEDISRM NMKRTHDVLE TKTGGLVIWR SGSKILLYRG VNYQYPYFVS DRDLAHEAAS GASSMDQGVV DSREKQSIAE SSAPSITNKM
0301: VKPMLTQGVG SPDKVRFQLP GEVQLVEEAD RLLEGLGPRF TDWWAYDPLP VDGDLLPAVV PDYRRPFRLL PYGVSPKLTD DEMTTIRRLG RPLPCHFALG
0401: RNRNLQGLAV AIVKLWEKCE LAKIAVKRGV QNTNSELMAE ELKWLTGGTL ISRDKDFIVL YRGKDFLPSA VSSAIEERRR QTMIMENSSV HGNKLTENEE
0501: EIKPRAVKED IELEAKDQKD HIQTHQMKSR QRNSPEAILE KTSMKLSMAL EKKANAEKVL ADLENRESPQ LSDIDKEGIT NDEKYMLRKI GLKMKPFLLL
0601: GRRGVFDGTI ENMHLHWKYR ELVKIICNEY SIEAAHKVAE ILEAESGGIL VAVEMVSKGY AIIVYRGKNY ERPQCLRPQT LLSKREALKR SVEAQRRKSL
0701: KLHVLKLSNN IEELNRQLVE DSATNETWSD GESSNMMVEE ETENQHTEPE KAREKIELGY SSDLSVPSSG EENWEDDSEG EVDPLTTSSQ EYQEDESESA
0801: SSQRHEGNSL DSTANLSVFA ETGSANASSF HDRSLPHNSF LNANRKLPGS STGSGSQISA LRERKSENDG LVTDLSNRER LILRKQALKM KKRPPFAVGR
0901: SNVVTGLART LKMHFQKNPL AIVNVKGRAN GTSVQEVIAK LKEETGALLV SQEPSKVILY RGWGAEEEMK SFYPNNNVKS SINLPSTRSF VDDPPHVSPA
1001: LIEAIRLECG L

Arabidopsis Description

CFM2CRM-domain containing factor CFM2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8L7C2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.