Factsheet for Solyc03g119450.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014644	Potato	plastid	98.29	97.82
CDX95528	Canola	cytosol	39.02	67.65
CDX92233	Canola	cytosol	7.8	64.65
VIT_17s0000g03610.t01	Wine grape	plastid	62.93	62.17
TraesCS1A01G376400.1	Wheat	plastid	52.8	60.64
KRH39182	Soybean	plastid	57.93	60.05
KRH48490	Soybean	nucleus	57.32	59.42
Os05t0551900-00	Rice	plastid	55.98	58.7
CDY18518	Canola	plastid	57.68	58.68
GSMUA_Achr3P26360_001	Banana	plastid	54.63	58.33
CDY51940	Canola	plastid	59.39	58.05
Bra001704.1-P	Field mustard	plastid	59.27	57.86
CDX75965	Canola	plastid	59.15	57.74
KXG22496	Sorghum	plastid	56.34	57.68
Bra037586.1-P	Field mustard	plastid	57.44	57.65
Zm00001d038922_P001	Maize	extracellular	55.49	57.23
AT3G18390.1	Thale cress	plastid	59.15	57.19
KRH41639	Soybean	mitochondrion, plastid	50.37	56.81
HORVU1Hr1G083550.4	Barley	plasma membrane	53.66	56.77
TraesCS1D01G383500.1	Wheat	mitochondrion, plastid	53.9	56.74
TraesCS1B01G396800.2	Wheat	plastid	54.02	55.93
Solyc08g044250.1.1	Tomato	mitochondrion	3.66	54.55
Bra022317.1-P	Field mustard	cytosol, endoplasmic reticulum	9.15	49.34
CDX95529	Canola	plastid	16.1	43.56
Solyc07g039500.2.1	Tomato	plastid	34.51	34.85
Solyc09g083350.2.1	Tomato	mitochondrion	35.49	32.96
Solyc02g086200.1.1	Tomato	plastid	30.73	31.42
Solyc01g105090.2.1	Tomato	plastid	10.37	22.67
Solyc02g087250.2.1	Tomato	extracellular	34.51	22.44
Solyc09g005270.2.1	Tomato	mitochondrion	10.0	22.4
Solyc12g014280.1.1	Tomato	mitochondrion, plastid	9.27	18.4
Solyc06g082990.2.1	Tomato	mitochondrion	9.88	17.53
Solyc07g047900.2.1	Tomato	mitochondrion, nucleus	10.0	14.31

Protein Annotations

EnsemblPlants:Solyc03g119450.2.1	EnsemblPlantsGene:Solyc03g119450.2	Gene3D:3.30.110.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf	ncoils:Coil
PANTHER:PTHR31846	PANTHER:PTHR31846:SF4	PFAM:PF01985	PFscan:PS51295	SEG:seg	SMART:SM01103
SUPFAM:SSF75471	UniParc:UPI00027665D0	UniProt:K4BM94	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3:+:68060997..68068141

Molecular Weight (calculated)

93394.8 Da

IEP (calculated)

6.597

GRAVY (calculated)

-0.652

Length

820 amino acids

Sequence
(BLAST)

001: MALSTAKFTQ LTPQLFSSFS TPTDRPPFFL FLRRTITAGN TRTNIPRKDN RKPYRDSNSS STPVKSNNSR SSTWLNKWPN TSSPVKHSSN SRTVESKTET
101: RYFDENTRVG TTAIDRIVLR LRNLGLGSDD EGEGEDEEEG NLKLDSSSTM QVNGEEEKLG DLLKRDWVRP DMILEESDDE GDTYLPWERS VEEEAVEVQR
201: GGKRTVRAPS LAELTIEDEE LRRLRRIGMT LRERINVPKA GVTGAVLEKI HHSWRKNELV RLKFHEVLAH DMRTGHEIVE RRTKGLVIWR AGSVMVVYRG
301: SNYEGPSSRS QSVNEEDNAL FVPDVSSDKS ITKDNKSFNP VIENRNQVHP NRVQSMTEEE SEFNRVLDGL GPRFEDWWGT GVLPVDADLL PQTIPGYKTP
401: FRLLPTGMRS RLTNAEMTNL RKIAKSLPCH FALGRNRNHQ GLAAAIVKLW EKSLVVKIAV KRGIQNTNNK LMSEELKMLT GGVLLLRNKY YIIFYRGKDF
501: VPPTVAAVLA ERQELTKQIQ DVEEQTRSGP AKVAPLITDG QAVAGSLAEF YEAQARWGRE ISAEERERML KEAAMAKMAR VVKRLEHKFE ISQTKKLKAE
601: KILAKIVESW IPAGPSDDLE TITEEERVML RRVGLRMKSY LPLGIRGVFD GVIENMHLHW KHRELVKLIS KEKVLAFVEE TARLLEYESG GILVAIERVP
701: KGYALIFYRG KNYRRPISLR PRNLLTKAKA LKRRVALQRY EALSQHIGEL ETTIEQTKSK IVDFGDTSNL EVLDQFNHVS ESLSEDEDSS LESGDDEDED
801: PEWENDDDSE YSSLEDDETG

Best Arabidopsis Sequence Match ( AT3G18390.1 )
(BLAST)

001: MALAPLNFTE MPLRSSLPLT SSSRYCSSPS LHALLFYSLG VKPSRQQIVR PFSSLRTSER SNNRSNNNRR LDQRNHKPTP PWIDKWPPSS SGAGGDHAGK
101: KGGENNGGDR IRSAEEEAEA KLRYLEKDKG QNAIERIVLR LRNLGLGSDD EDDVEDDEGG GINGGDVKPV TGEERLGDLL KREWVRPDMM LAEGEESEEE
201: DEVLLPWEKN EEEQAAERVV GEGGVAVMQK RRARAPSLAE LTVEDSELRR LRRDGMYLRV RINIPKAGLT QAVMEKIYDT WRKEELVRLK FHEVLARDMK
301: TAHEIVERRT GGMVIWRAGS VMVVYRGLDY KGPPVISNQM AGPKETLFVP DVSSAGDEAT NAKDNQSAPL VIKDPIIKNP IRKENMTEEE VEFNSLLDSL
401: GPRFQEWWGT GVLPVDADLL PPTIPGYKTP FRLLPTGMRS NLTNAEMTNL RKIGKTLPCH FALGRNRNHQ GLAAAILQIW EKSLIAKIAV KRGIQNTNNK
501: LMADEVKTLT GGVLLLRNKY YIVIYRGKDF LPSSVAATLA ERQELTKEIQ DVEERVRNRE IEAVQPVGDK VPAEAGTLAE FYEAQARWGK EITPDHREKM
601: IEEASRVANA RVVKRIQHKL NLAQSKFQRA EKLLSKIEAS MIPNGPDYDQ EVISEEERAM FRKVGLKMKA YLPIGIRGVF DGVIENMHLH WKHRELVKLI
701: SKQKNQAFVE ETARLLEYES GGVLVAIEKV PKGFALIYYR GKNYRRPISL RPRNLLTKAK ALKRSIAMQR HEALSQHISE LERTIEQMQS QLTSKNPSYS
801: ESEWENDEDD DDDEEEEKDD VEDNESDWDE TDGESAISSI EEADMSSR

Arabidopsis Description

EMB1865CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9LS51]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.