Factsheet for Bra001704.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51940	Canola	plastid	98.33	98.45
CDX75965	Canola	plastid	97.14	97.14
Bra037586.1-P	Field mustard	plastid	84.4	86.78
AT3G18390.1	Thale cress	plastid	85.48	84.67
VIT_17s0000g03610.t01	Wine grape	plastid	61.07	61.81
KRH48490	Soybean	nucleus	56.55	60.05
TraesCS1A01G376400.1	Wheat	plastid	50.95	59.94
KRH39182	Soybean	plastid	56.43	59.92
GSMUA_Achr3P26360_001	Banana	plastid	54.29	59.38
Solyc03g119450.2.1	Tomato	nucleus	57.86	59.27
PGSC0003DMT400014644	Potato	plastid	57.5	58.62
Os05t0551900-00	Rice	plastid	54.52	58.57
KXG22496	Sorghum	plastid	54.52	57.18
HORVU1Hr1G083550.4	Barley	plasma membrane	52.62	57.03
KRH41639	Soybean	mitochondrion, plastid	49.17	56.81
TraesCS1D01G383500.1	Wheat	mitochondrion, plastid	52.62	56.74
Zm00001d038922_P001	Maize	extracellular	53.45	56.48
Bra022317.1-P	Field mustard	cytosol, endoplasmic reticulum	10.12	55.92
TraesCS1B01G396800.2	Wheat	plastid	52.62	55.81
Bra024132.1-P	Field mustard	cytosol, plasma membrane, plastid	5.48	46.46
Bra024130.1-P	Field mustard	cytosol	30.48	39.94
Bra033883.1-P	Field mustard	mitochondrion	34.4	33.37
Bra011945.1-P	Field mustard	mitochondrion	7.5	32.64
Bra036865.1-P	Field mustard	plastid	33.21	32.44
Bra039123.1-P	Field mustard	plastid	32.14	27.25
Bra034894.1-P	Field mustard	mitochondrion	9.4	24.46
Bra000492.1-P	Field mustard	mitochondrion	9.76	23.16
Bra023555.1-P	Field mustard	golgi	29.52	22.55
Bra015127.1-P	Field mustard	plastid	10.83	20.92
Bra033017.1-P	Field mustard	plastid	9.88	17.22
Bra036994.1-P	Field mustard	nucleus	15.12	17.14
Bra025285.1-P	Field mustard	plastid	10.0	15.82

Protein Annotations

EnsemblPlants:Bra001704.1	EnsemblPlants:Bra001704.1-P	EnsemblPlantsGene:Bra001704	Gene3D:3.30.110.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf
ncoils:Coil	PANTHER:PTHR31846	PANTHER:PTHR31846:SF4	PFAM:PF01985	PFscan:PS51295	SEG:seg
SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0002540475	UniProt:M4CBX4	MapMan:35.1	:

Description

AT3G18390 (E=0.0) EMB1865 | EMB1865 (embryo defective 1865); RNA binding

Coordinates

chrA03:+:17939438..17943057

Molecular Weight (calculated)

95527.0 Da

IEP (calculated)

5.601

GRAVY (calculated)

-0.755

Length

840 amino acids

Sequence
(BLAST)

001: MAALLPTNIT EMPLRSPFLL TSTSRYSSSP SLHALIFHSL SPKPYRHILQ PFSSLRTSER NNRSHNNRRS DHRSPKPTPP WIDKWPPSSS DEKANERGKL
101: QSSEEESEAK RRYLEKDKGQ SSIERIVLRL RNLGLAASDD DEEDDNDGGD GEEDVKKPVT GEERLGDLLK REWVRPDVIL AEGEESDDEE DDDVLLPWEK
201: NEGEQVAERN EGDGGLAAVK KRRARAPSLA ELTVEDSELR RLRRDGMYLR VRINIPKAGL TQAVMEKIHD TWRKEELVRL KFHEVLARDM KTAHEIVERR
301: TGGMVIWRAG SVMVVYRGRD YQGPSAVSNQ IARPEETLFV PDVSSAGDEA TNAKDNNQNA PPEIKDPIVK NPIRKERMTE EEAEFNQLLD SLGPRFQEYW
401: GTGVLPVDAD LLPPTIPGYK TPFRLLPTGM RSNLTNAEMT NLRKIGKTLP CHFALGRNRN HQGLAAAILK LWEKSLIVKI AVTRGIQNTN NKLMAEEIKT
501: LTGGVLLLRN KYYIVIYRGK DFLPSSVAAT LAERQELTKE IQDVEEKVRN RDIEATQPVG DKVPAEAGTL AEFYEAQARW GKEITPDHRE KMIEEASRVA
601: SARVVKRIQH KLNLAQSKFQ RAEKLLSKVE ASMIPSGPDY DQEVISEEER IMFRKVGLKM KSYLPLGIRG VFDGVIENMH LHWKHRELVK LISKQKSLAF
701: VEDTARLLEY ESGGVLVAIE KVPKGFALIY YRGKNYQRPI SLRPRNLLTK AKALKRSIAM QRHEALSQHI SELEKTIEQM QNELTAKNPS YNESEWENDD
801: DDEDGGEEEK DDAEDDESDW DEADAESTIS SLEEADYPLR

Best Arabidopsis Sequence Match ( AT3G18390.1 )
(BLAST)

001: MALAPLNFTE MPLRSSLPLT SSSRYCSSPS LHALLFYSLG VKPSRQQIVR PFSSLRTSER SNNRSNNNRR LDQRNHKPTP PWIDKWPPSS SGAGGDHAGK
101: KGGENNGGDR IRSAEEEAEA KLRYLEKDKG QNAIERIVLR LRNLGLGSDD EDDVEDDEGG GINGGDVKPV TGEERLGDLL KREWVRPDMM LAEGEESEEE
201: DEVLLPWEKN EEEQAAERVV GEGGVAVMQK RRARAPSLAE LTVEDSELRR LRRDGMYLRV RINIPKAGLT QAVMEKIYDT WRKEELVRLK FHEVLARDMK
301: TAHEIVERRT GGMVIWRAGS VMVVYRGLDY KGPPVISNQM AGPKETLFVP DVSSAGDEAT NAKDNQSAPL VIKDPIIKNP IRKENMTEEE VEFNSLLDSL
401: GPRFQEWWGT GVLPVDADLL PPTIPGYKTP FRLLPTGMRS NLTNAEMTNL RKIGKTLPCH FALGRNRNHQ GLAAAILQIW EKSLIAKIAV KRGIQNTNNK
501: LMADEVKTLT GGVLLLRNKY YIVIYRGKDF LPSSVAATLA ERQELTKEIQ DVEERVRNRE IEAVQPVGDK VPAEAGTLAE FYEAQARWGK EITPDHREKM
601: IEEASRVANA RVVKRIQHKL NLAQSKFQRA EKLLSKIEAS MIPNGPDYDQ EVISEEERAM FRKVGLKMKA YLPIGIRGVF DGVIENMHLH WKHRELVKLI
701: SKQKNQAFVE ETARLLEYES GGVLVAIEKV PKGFALIYYR GKNYRRPISL RPRNLLTKAK ALKRSIAMQR HEALSQHISE LERTIEQMQS QLTSKNPSYS
801: ESEWENDEDD DDDEEEEKDD VEDNESDWDE TDGESAISSI EEADMSSR

Arabidopsis Description

EMB1865CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9LS51]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.