Factsheet for Bra000492.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83289	Canola	mitochondrion	98.59	93.82
AT2G28480.1	Thale cress	mitochondrion	85.59	81.45
Bra011945.1-P	Field mustard	mitochondrion	44.35	81.35
Solyc09g005270.2.1	Tomato	mitochondrion	63.28	61.2
PGSC0003DMT400030768	Potato	mitochondrion	62.99	60.6
KRH29618	Soybean	nucleus	46.05	57.39
VIT_05s0102g00700.t01	Wine grape	plastid	63.84	54.33
PGSC0003DMT400039655	Potato	mitochondrion, plastid	59.6	53.28
KRH24621	Soybean	mitochondrion	61.3	50.82
TraesCS3D01G505800.1	Wheat	mitochondrion	56.21	50.64
TraesCS3B01G562100.1	Wheat	mitochondrion	56.21	50.25
Solyc12g014280.1.1	Tomato	mitochondrion, plastid	58.19	49.88
HORVU3Hr1G110360.1	Barley	mitochondrion	55.93	49.5
Zm00001d042043_P001	Maize	mitochondrion	55.08	49.49
EES02081	Sorghum	mitochondrion	56.5	49.38
Os01t0958400-02	Rice	mitochondrion	53.95	45.8
TraesCS3A01G499000.2	Wheat	mitochondrion, nucleus	55.65	45.39
GSMUA_Achr3P16860_001	Banana	mitochondrion	56.21	44.52
Bra034894.1-P	Field mustard	mitochondrion	35.03	38.39
Bra015127.1-P	Field mustard	plastid	28.53	23.22
Bra033017.1-P	Field mustard	plastid	28.53	20.95
Bra022317.1-P	Field mustard	cytosol, endoplasmic reticulum	8.76	20.39
Bra025285.1-P	Field mustard	plastid	28.81	19.21
Bra024130.1-P	Field mustard	cytosol	20.34	11.23
Bra001704.1-P	Field mustard	plastid	23.16	9.76
Bra037586.1-P	Field mustard	plastid	22.32	9.67
Bra036865.1-P	Field mustard	plastid	20.9	8.6
Bra033883.1-P	Field mustard	mitochondrion	20.9	8.55
Bra039123.1-P	Field mustard	plastid	22.88	8.17
Bra036994.1-P	Field mustard	nucleus	13.84	6.61
Bra023555.1-P	Field mustard	golgi	18.93	6.09
Bra024132.1-P	Field mustard	cytosol, plasma membrane, plastid	1.41	5.05

Protein Annotations

EnsemblPlants:Bra000492.1	EnsemblPlants:Bra000492.1-P	EnsemblPlantsGene:Bra000492	Gene3D:3.30.110.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf
ncoils:Coil	PANTHER:PTHR31426	PANTHER:PTHR31426:SF2	PFAM:PF01985	PFscan:PS51295	SEG:seg
SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI000253FFB2	UniProt:M4C8G4	MapMan:35.1	:

Description

AT2G28480 (E=2e-134) | RNA binding

Coordinates

chrA03:+:11388002..11389240

Molecular Weight (calculated)

40950.1 Da

IEP (calculated)

10.239

GRAVY (calculated)

-0.849

Length

354 amino acids

Sequence
(BLAST)

001: MAIAFARTLQ RASSSLLRSS YPLLISARSI PQSRDLACST STFFQPTIST ICRRNFSHGT VNLVISEGKP KFETRELDPP KKWKWLTKKR LKLKRKKERE
101: ERNAANRKDP RRLTVKGKKK RKFANPEERI KHKLERAKIK EASLVEKLKR YEVAKVQGPE VRPHEITGEE RFYLKKMGQK RSNYVPIGRR GVFGGVILNM
201: HMHWKKHETV KVICNNSKPG QVQQYAEELA KLSGGVPVNI IGDDTIVFYR GKGYVQPKVM SPIDTLSKKR AYEKSKYEQS LESVRHFIAI AEKELELYYR
301: HVALYDDPSN RNPLSVLDDS PLDSCDHHRN RLYMSCSDTE ADSEDEEESD EEAQ

Best Arabidopsis Sequence Match ( AT2G28480.1 )
(BLAST)

001: MAIAFARGLR KASSFLRSSY PLLISSRLLP ISQEFYDSTL TFVLPTRPIC RNFSHGYGTV NLVISEGKPK FETRELDPPK KYKWLTKKRL KLKRKKEREE
101: RNAANRKDPR RLTVKGKKKK FVNAEERIKY KLEKAKIKEA LLIERLKRYE VAKVQGPEVR PHEITGEERF YLKKMGQKRS NYVPIGRRGV FGGVILNMHL
201: HWKKHETVKV ICNNSKPGQV QQYAEELAKL SGGVPVNIIG DDTIIFYRGK GYVQPQVMSP IDTLSKKRAY EKSKYEQSLE SVRHFIAIAE KELELYYRHV
301: ALYDDPNNRN PLSILDDSPS ESRQHHENEF FLSCSDTDSS SEDEDEDEEL CELDNGSSSS SSAKEELSES EN

Arabidopsis Description

At2g28480 [Source:UniProtKB/TrEMBL;Acc:Q9SK10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.