Factsheet for Bra036994.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70711	Canola	nucleus	33.47	96.5
Bra033883.1-P	Field mustard	mitochondrion	29.01	24.83
AT3G23070.1	Thale cress	plastid	28.07	23.61
Bra024130.1-P	Field mustard	cytosol	18.89	21.84
TraesCS4A01G150500.1	Wheat	plastid	21.73	21.67
KRG92332	Soybean	plastid	24.29	21.56
Bra036865.1-P	Field mustard	plastid	24.7	21.28
GSMUA_Achr3P29330_001	Banana	cytosol, nucleus, plastid	23.89	20.85
Bra011945.1-P	Field mustard	mitochondrion	5.4	20.73
VIT_05s0020g04770.t01	Wine grape	plastid	24.83	20.4
PGSC0003DMT400002898	Potato	mitochondrion	24.29	20.39
TraesCS4D01G150700.1	Wheat	plastid	23.35	20.31
Solyc09g083350.2.1	Tomato	mitochondrion	24.16	20.27
HORVU7Hr1G052190.1	Barley	plastid	24.02	20.07
TraesCS4B01G161000.1	Wheat	plastid	23.08	20.05
Zm00001d007572_P001	Maize	plastid	22.67	19.95
OQU83762	Sorghum	cytosol, nucleus, plastid	22.81	19.77
KRH34465	Soybean	plastid	21.05	19.38
Os11t0592400-00	Rice	plastid	22.94	19.19
Bra022317.1-P	Field mustard	cytosol, endoplasmic reticulum	3.64	17.76
Bra034894.1-P	Field mustard	mitochondrion	7.29	16.72
Bra001704.1-P	Field mustard	plastid	17.14	15.12
Bra037586.1-P	Field mustard	plastid	16.46	14.93
Bra000492.1-P	Field mustard	mitochondrion	6.61	13.84
Bra039123.1-P	Field mustard	plastid	18.22	13.62
Bra015127.1-P	Field mustard	plastid	7.83	13.33
Bra033017.1-P	Field mustard	plastid	7.42	11.41
Bra025285.1-P	Field mustard	plastid	7.96	11.11
Bra023555.1-P	Field mustard	golgi	14.3	9.64
Bra024132.1-P	Field mustard	cytosol, plasma membrane, plastid	1.08	8.08
GSMUA_Achr8P05580_001	Banana	plasma membrane	5.8	7.38

Protein Annotations

MapMan:35.1	EnsemblPlantsGene:Bra036994	EnsemblPlants:Bra036994.1	EnsemblPlants:Bra036994.1-P	InterPro:CFM3	ncoils:Coil
GO:GO:0000373	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR001890	InterPro:IPR035920	UniProt:M4F7D4
PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF13	InterPro:RNA-binding_CRM	SUPFAM:SSF75471
UniParc:UPI00025410F0	InterPro:YhbY_like_sf	SEG:seg	:	:	:

Description

AT3G23070 (E=4e-074) | RNA binding

Coordinates

chrA03:+:29032511..29034871

Molecular Weight (calculated)

86627.3 Da

IEP (calculated)

9.507

GRAVY (calculated)

-0.841

Length

741 amino acids

Sequence
(BLAST)

001: MVMGANVFKL DSPKSDTDKE MTTMSKVAVQ SQITLLHRKS KKKKKKKHKR ISGGDEIVKT KSSKVNRRHE KALINSDDYG AKRDQGKRRR VDSDVGNTTH
101: KPRKKNSMLA MIAIKCGVQL TTSERMAEDF EKLTGGILLS RNEDGLVFYR GKNFLSREID EALVEQEKLV RSLQEEEEAR LEEGSSALIV ISTEPSNELV
201: YAGTLGKTRD LTSKWGMNLN DGHHAEEVKH EVKELRHKNL VRKLEKKFVI AERKLLKAER GLVKVEEYLQ PAEQRADIES ITGEERFICR KRGSNMKAFL
301: LIGRRGVFNG TVENMHLHWK YGELVKRKAL ARSIKLQRHE GCIKETLAMH ARAERMGVET ELMEKIEDFR RVKKLLTYVR FEPVSSRKTL LPSREQMRTK
401: ELLLEKHLEE NEEQKVSVLS CMHILRYTRT EVESERVKLN RVAETKGFAH DLEDQLRELE KKETDITELS CNHDEEAEEE EKKMIQKYHK DNGCEQSQFP
501: ILCQSCFCDN LYLRMVIADY KIECKVRTRF FTVFRWQPSR TERYKKPDIC QTYSKLKNRC QVCLLDLEKG LPVQVSDTAF NITTHGKEKH FSATEEDINH
601: KSTILENEKD QLRKLYLEDL RGQNLQRLAA SDGLSMEKTK FQVESKHSNG KKEELREKTE YVTREVFSMY LMREHEELVN KMVEEHSKWL TKIQHERVDL
701: VLGIEMQKRE FGYCIKDKRE EFKNSSRERV VRSEIGSTGN R

Best Arabidopsis Sequence Match ( AT3G23070.1 )
(BLAST)

001: MAMKPSLHFC PTTVTKKFVY SFQSSFCFRF LRYSSSISLG SCKGVTFSSR NDQIASRRFS FSRDCNNGVW LENWNRIQKR NQPKPPKVVV NYRKEGRFSG
101: SEIVSGDDNR SRDGDGSTME KIVEKLKKYG YMEEVQNKEI EQERRIEKGS VEDIFYVEEG KLPNTRGGFT EESLLGGENV IGSNGDVGFP WEKMSAKEKK
201: ELEAEWTAKK ENRYSLAEMT LPESELRRLR NLTFRTASKM RIRGGGVTQV AVDAIKEKWK SAEIVRLKIE GASALNMRKM HEILEKKTGG LVIWRSGTSI
301: SLYRGVSYEL PSGKWNKQRR EETPPEAVIE NHDETTTMVD KSDEKVHLPQ LEQETTSVEK KDQTSPVVEY EDELDELLDD LGPRFMDWPG DNPLPVDADL
401: LPGAIPDYEP PFRVLPYGVR SSLGPKEATA LRRLARSIPP HFALGRSRQL QGLATAMVRL WEKSMLAKIA IKRGVQSTTS ERMAEDLKKL TGGIMLSRNK
501: DFLVFYRGKN FLSREVADAL VEQERFVRTL QDEEEQARLR GSSALIVPST EPANKLVSAG TLGETLDATG KWGKNLDDDD HSDEVKQEVE ILRHENLVRK
601: LERKLAFAER KLLKAERGLA KVEVCLKPAE QREDPESITD EERFMFRKLG LKMKAFLLLG RRGVFDGTVE NMHLHWKYRE LVKIIVKAKT FDGVKKVALA
701: LEAESGGILV SIDKVTKGYA IIVYRGQDYK RPTMLRPKNL LTKRKALARS IELQRREGLL KHISTMQAKA KQLRAEIEQM EKVTDKGDEE LYNKLDMAYA
801: SSDEETDEED DDDAFPETYA EGEDGEEGEI LAGELSETED KDLDSNESET GFGDDSVLFA EDLHTKSEDL PNKKVRLQHQ S

Arabidopsis Description

CFM3ACRM-domain containing factor CFM3A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4J2U9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.