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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • nucleus 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY10696 Canola plastid 78.32 80.61
CDY10350 Canola plastid 78.66 79.93
Bra033883.1-P Field mustard mitochondrion 78.55 79.91
AT4G14510.1 Thale cress plastid 67.65 65.71
KRG92332 Soybean plastid 54.82 57.84
VIT_05s0020g04770.t01 Wine grape plastid 57.55 56.21
Solyc09g083350.2.1 Tomato mitochondrion 55.28 55.15
PGSC0003DMT400002898 Potato mitochondrion 55.16 55.04
KRH34465 Soybean plastid 50.17 54.91
TraesCS4A01G150500.1 Wheat plastid 45.18 53.57
CDY70711 Canola nucleus 14.98 51.36
GSMUA_Achr3P29330_001 Banana cytosol, nucleus, plastid 49.38 51.24
TraesCS4B01G161000.1 Wheat plastid 47.56 49.12
TraesCS4D01G150700.1 Wheat plastid 47.45 49.06
HORVU7Hr1G052190.1 Barley plastid 48.58 48.25
Zm00001d007572_P001 Maize plastid 45.97 48.1
OQU83762 Sorghum cytosol, nucleus, plastid 45.97 47.37
Os11t0592400-00 Rice plastid 46.88 46.61
AT4G29750.1 Thale cress plastid 33.71 35.32
AT3G18390.1 Thale cress plastid 32.8 34.08
GSMUA_Achr8P05580_001 Banana plasma membrane 21.34 32.25
AT5G16180.1 Thale cress endoplasmic reticulum 26.33 32.22
AT3G01370.1 Thale cress plastid 33.03 28.78
Bra036994.1-P Field mustard nucleus 23.61 28.07
AT4G13070.1 Thale cress mitochondrion 8.97 23.03
AT3G25440.1 Thale cress plastid 10.9 21.62
AT2G28480.1 Thale cress mitochondrion 9.08 21.51
AT3G27550.2 Thale cress mitochondrion 9.31 14.99
Protein Annotations
MapMan:16.12.2.1.3Gene3D:3.30.110.60EntrezGene:821881ProteinID:AEE76712.1EMBL:AK226876ArrayExpress:AT3G23070
EnsemblPlantsGene:AT3G23070RefSeq:AT3G23070TAIR:AT3G23070RefSeq:AT3G23070-TAIR-GEnsemblPlants:AT3G23070.1TAIR:AT3G23070.1
Symbol:ATCFM3AUnigene:At.71222ProteinID:BAB02098.1InterPro:CFM3ncoils:CoilUniProt:F4J2U9
GO:GO:0000003GO:GO:0000373GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0006139
GO:GO:0006397GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0008380GO:GO:0009507
GO:GO:0009536GO:GO:0009791GO:GO:0009987GO:GO:0030529GO:GO:0048316InterPro:IPR001890
InterPro:IPR035920RefSeq:NP_188947.2PFAM:PF01985PO:PO:0000013PO:PO:0000037PO:PO:0000230
PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025281PFscan:PS51295PANTHER:PTHR31846PANTHER:PTHR31846:SF13
InterPro:RNA-binding_CRMSMART:SM01103SUPFAM:SSF75471UniParc:UPI0000196DC5InterPro:YhbY_like_sfSEG:seg
Description
CFM3ACRM-domain containing factor CFM3A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4J2U9]
Coordinates
chr3:+:8203393..8207419
Molecular Weight (calculated)
100175.0 Da
IEP (calculated)
6.087
GRAVY (calculated)
-0.700
Length
881 amino acids
Sequence
(BLAST)
001: MAMKPSLHFC PTTVTKKFVY SFQSSFCFRF LRYSSSISLG SCKGVTFSSR NDQIASRRFS FSRDCNNGVW LENWNRIQKR NQPKPPKVVV NYRKEGRFSG
101: SEIVSGDDNR SRDGDGSTME KIVEKLKKYG YMEEVQNKEI EQERRIEKGS VEDIFYVEEG KLPNTRGGFT EESLLGGENV IGSNGDVGFP WEKMSAKEKK
201: ELEAEWTAKK ENRYSLAEMT LPESELRRLR NLTFRTASKM RIRGGGVTQV AVDAIKEKWK SAEIVRLKIE GASALNMRKM HEILEKKTGG LVIWRSGTSI
301: SLYRGVSYEL PSGKWNKQRR EETPPEAVIE NHDETTTMVD KSDEKVHLPQ LEQETTSVEK KDQTSPVVEY EDELDELLDD LGPRFMDWPG DNPLPVDADL
401: LPGAIPDYEP PFRVLPYGVR SSLGPKEATA LRRLARSIPP HFALGRSRQL QGLATAMVRL WEKSMLAKIA IKRGVQSTTS ERMAEDLKKL TGGIMLSRNK
501: DFLVFYRGKN FLSREVADAL VEQERFVRTL QDEEEQARLR GSSALIVPST EPANKLVSAG TLGETLDATG KWGKNLDDDD HSDEVKQEVE ILRHENLVRK
601: LERKLAFAER KLLKAERGLA KVEVCLKPAE QREDPESITD EERFMFRKLG LKMKAFLLLG RRGVFDGTVE NMHLHWKYRE LVKIIVKAKT FDGVKKVALA
701: LEAESGGILV SIDKVTKGYA IIVYRGQDYK RPTMLRPKNL LTKRKALARS IELQRREGLL KHISTMQAKA KQLRAEIEQM EKVTDKGDEE LYNKLDMAYA
801: SSDEETDEED DDDAFPETYA EGEDGEEGEI LAGELSETED KDLDSNESET GFGDDSVLFA EDLHTKSEDL PNKKVRLQHQ S
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.