Factsheet for GSMUA_Achr3P29330_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G150500.1	Wheat	plastid	48.88	55.85
KRG92332	Soybean	plastid	53.47	54.37
VIT_05s0020g04770.t01	Wine grape	plastid	57.24	53.88
GSMUA_Achr8P05570_001	Banana	cytosol	21.67	53.49
Zm00001d007572_P001	Maize	plastid	52.89	53.33
OQU83762	Sorghum	cytosol, nucleus, plastid	53.12	52.75
KRH34465	Soybean	plastid	49.82	52.55
TraesCS4B01G161000.1	Wheat	plastid	52.77	52.52
TraesCS4D01G150700.1	Wheat	plastid	52.18	52.0
PGSC0003DMT400002898	Potato	mitochondrion	53.59	51.53
Solyc09g083350.2.1	Tomato	mitochondrion	53.36	51.3
CDY10696	Canola	plastid	51.71	51.28
Bra033883.1-P	Field mustard	mitochondrion	51.94	50.92
CDY10350	Canola	plastid	51.94	50.87
HORVU7Hr1G052190.1	Barley	plastid	53.12	50.85
Os11t0592400-00	Rice	plastid	52.53	50.34
AT3G23070.1	Thale cress	plastid	51.24	49.38
CDY16286	Canola	plastid	49.12	48.43
CDY29740	Canola	plastid	49.94	48.29
Bra036865.1-P	Field mustard	plastid	48.88	48.26
AT4G14510.1	Thale cress	plastid	50.06	46.86
CDY70711	Canola	nucleus	13.19	43.58
GSMUA_Achr3P26360_001	Banana	plastid	34.28	37.89
GSMUA_Achr8P05580_001	Banana	plasma membrane	21.55	31.39
GSMUA_Achr9P19190_001	Banana	plastid	27.21	29.43
GSMUA_Achr10P...	Banana	plastid	34.28	29.13
GSMUA_Achr2P05820_001	Banana	cytosol	9.31	24.16
Bra036994.1-P	Field mustard	nucleus	20.85	23.89
GSMUA_Achr9P12700_001	Banana	mitochondrion	9.31	21.07
GSMUA_Achr3P16860_001	Banana	mitochondrion	10.48	19.91
GSMUA_Achr9P19780_001	Banana	nucleus	10.01	15.02

Protein Annotations

MapMan:16.12.2.1.3	Gene3D:3.30.110.60	InterPro:CFM3	ncoils:Coil	GO:GO:0000373	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr3G29330_001	EnsemblPlants:GSMUA_Achr3P29330_001
EnsemblPlants:GSMUA_Achr3T29330_001	InterPro:IPR001890	InterPro:IPR035920	UniProt:M0SIU9	PFAM:PF01985	PFscan:PS51295
PANTHER:PTHR31846	PANTHER:PTHR31846:SF13	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	TMHMM:TMhelix
UniParc:UPI000296EFCD	InterPro:YhbY_like_sf	SEG:seg	:	:	:

Description

chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G29330_001]

Coordinates

chr3:-:28531522..28537851

Molecular Weight (calculated)

95776.0 Da

IEP (calculated)

5.218

GRAVY (calculated)

-0.604

Length

849 amino acids

Sequence
(BLAST)

001: MAKIVEKLRK FGYIDDSEEV KERPLPEKGS VEDIFYAEDG ILPDSRGGLS WDVNEKARFP WEKPREEEEE KQASARKTRS KTSLAELTLP EGELRRLRHL
101: AIRTKSKTKI GGAGVTKEIV DLIHEKWKTE EVVRLKCEGP PALNMKRMHE ILEVRWLMIC PIEVYCVVLK KCGGDSNSCN IEKESTAHVQ SEACCTYAIF
201: LCCTSFLFAF LILFSVTNVS QCGFFFWKTG GLVIWRSGTS ISLYRGVTYE IPQLVKRPYQ SNQRASLDSF KQPLVEEEKD VESPPKIEYE SEIDKLLDDL
301: GPRYTDWPGS GPPPVDADLL PSVVPGYKPP FRILPYGVRP SLGLKEGTAL RRLARALPPH FALGRSRQHQ GLAAAMVKLW EKSSIAKISL KRGVQLTSSE
401: RMAEDIKKLT GGAILSRNKD YIVFYRGKDF LSPEVTEALL ERERLAKALQ DEEEQARLRA SSSVASDVDS FDESGTAGTL NETLEAAARW GNNIGDDHMD
501: KMMRAAEMAR HAGLVKKLER KLFIAERKLT KAGKALAKVE ESLKPTEHVK DPEAITDEER FMFRKLGLRM KAFLLLGRRG VFDGTIENMH LHWKYRELVK
601: IIVKAKTFAQ VQNVALALEA ESGGVLVSVD KISKGFAIIV YRGKDYHRPP TLRPKNLLTK RKALARSIEL QRREALNRHI SNVQKKVEQL RSELVHLDNV
701: KDHGDEELYA NLDSAYSTED EEDSEDEGDE AYLDTFNGSV AIDRDDGDAH NHNDDDDYNE ESEADGTSNK DEHDSYFDGW INAVDISSDE HGGAQSHYKE
801: DNDSDEDSEI DDYSEDDEND SEHYLRSSTS SANNQQSGLA LPVADNMCI

Best Arabidopsis Sequence Match ( AT4G14510.1 )
(BLAST)

001: MAINSSHHFC PMTTTTTTSA KFVDSLGSSF CKFHGTSSSI SLRSYRFGFS FMKNVKRLSC EGSSSSSSSR NENWNRTQKQ NQFRPSKVVL NRRKDERFSD
101: LGVISGENSS RSGDVGGGSG SSSTMEKIVE KLKKYGFVDE DQFQDKEVEQ ERRIEKSSVE ERFYVEERRG GFSEESPFGV YGGNDEVKFP WEKVSSMEKK
201: ELVNGEWTAK KESRYSLAEM TLSEFELNRL RNVMFRTKSK MRVTGAGVTQ AVVDAIQEKW KGSEIVRLKI EGSSALNMRR MHEILERKTG GLVIWRSGTS
301: IALYNYKGGS NRDGSGNMNK QVYRRAERLP SSLPTSTVDQ SVQLVNLPQL EKEPTVVGNK DRTSPQEVEY EDEINELLEG LGPRYTDWQG GYPLPVDADL
401: LPGIVPGYEP PFRALPYGVR STLGTKEATS LRRIATVLPP HFALGRSRQL QGLATAMVKL WQKSLIAKVA LKRGVQLTTS ERMAEDIKRL TGGMLLSRNK
501: DFLVFYRGKS FLSLEVGEAL MEKEMLVRTL QDEEEQARLR ASSALVVPSI KANQQLARTL QDKEEQARPS ALVLPSTKAN QNLVSAGTLG ETLDATGKWG
601: KNLDNDDHVE EMKQEVEKVR SAKLVRKLER KLAFAEKKLL KAERALAKVE ESLKPAEQRT DLEGITEEER FMFQKLGLKM KAFLLLGRRG VFDGTVENMH
701: LHWKYRELIK ILVKAKTLEG AQKVAMALEA ESGGILVSVD KISKGYAVIV YRGKDYKRPT TLRPKNLLTK RKALARSLEL QKREALIKHI EAIQTRSEQL
801: RAEIEQVELV KDKGDETLYD KLDMAYSSDE ETEETDGEED DVYLDTYEDE GEDDEEGGIQ ANGSLSETDV EFGSDESDTD FGDNSASSTT PETTFVELQN
901: EELDVQP

Arabidopsis Description

CFM3BCRM-domain containing factor CFM3B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4JVH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.