CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34465	Soybean	plastid	88.14	91.43
VIT_05s0020g04770.t01	Wine grape	plastid	65.03	60.2
PGSC0003DMT400002898	Potato	mitochondrion	60.6	57.3
Solyc09g083350.2.1	Tomato	mitochondrion	60.12	56.85
CDY10696	Canola	plastid	56.53	55.14
AT3G23070.1	Thale cress	plastid	57.84	54.82
CDY10350	Canola	plastid	56.77	54.67
Bra033883.1-P	Field mustard	mitochondrion	56.17	54.16
TraesCS4A01G150500.1	Wheat	plastid	48.14	54.1
GSMUA_Achr3P29330_001	Banana	cytosol, nucleus, plastid	54.37	53.47
Bra036865.1-P	Field mustard	plastid	54.37	52.79
CDY29740	Canola	plastid	55.21	52.51
CDY16286	Canola	plastid	54.01	52.38
AT4G14510.1	Thale cress	plastid	55.57	51.16
Zm00001d007572_P001	Maize	plastid	51.26	50.83
TraesCS4B01G161000.1	Wheat	plastid	50.42	49.36
TraesCS4D01G150700.1	Wheat	plastid	50.3	49.3
OQU83762	Sorghum	cytosol, nucleus, plastid	49.82	48.66
HORVU7Hr1G052190.1	Barley	plastid	51.02	48.03
Os11t0592400-00	Rice	plastid	50.42	47.52
CDY70711	Canola	nucleus	13.77	44.75
KRH41639	Soybean	mitochondrion, plastid	34.49	39.61
KRH02705	Soybean	plastid	36.17	38.04
KRH39182	Soybean	plastid	35.45	37.42
KRH48490	Soybean	nucleus	35.33	37.29
KRH01727	Soybean	plastid	29.1	32.53
GSMUA_Achr8P05580_001	Banana	plasma membrane	22.63	32.42
KRH70401	Soybean	plastid	20.36	28.96
KRG93411	Soybean	plastid	33.65	27.18
KRG93409	Soybean	plastid	32.1	26.1
Bra036994.1-P	Field mustard	nucleus	21.56	24.29
KRH07419	Soybean	cytosol	6.83	21.84
KRH60382	Soybean	mitochondrion	9.7	21.83
KRH41679	Soybean	mitochondrion	9.46	21.29
KRH69093	Soybean	mitochondrion	11.38	21.25
KRH29618	Soybean	nucleus	6.71	19.72
KRH24621	Soybean	mitochondrion	8.98	17.56
KRH71856	Soybean	nucleus	10.66	17.18
KRH65957	Soybean	cytosol, mitochondrion, nucleus, plastid	9.1	15.23
KRG93197	Soybean	mitochondrion	10.06	12.86
KRH56532	Soybean	mitochondrion	9.94	12.71

Protein Annotations

EntrezGene:100796394	MapMan:16.12.2.1.3	Gene3D:3.30.110.60	EMBL:ACUP02012740	InterPro:CFM3	ncoils:Coil
EnsemblPlantsGene:GLYMA_20G205000	GO:GO:0000373	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR001890	InterPro:IPR035920
UniProt:K7N4Q3	EnsemblPlants:KRG92332	ProteinID:KRG92332	ProteinID:KRG92332.1	PFAM:PF01985	PFscan:PS51295
PANTHER:PTHR31846	PANTHER:PTHR31846:SF13	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI000233DBED
InterPro:YhbY_like_sf	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:44190063..44197387

Molecular Weight (calculated)

94798.3 Da

IEP (calculated)

9.650

GRAVY (calculated)

-0.636

Length

835 amino acids

Sequence
(BLAST)

001: MALVPTRPFF DSFHSSPNFH SLRFCNSLFR HSLTPSPNST FLRRKPLFIF RCNPAKSFST DKHWLKRWND PTNNHARPKP PCAVLDYSEN GHASKSGLAS
101: SDEEGGDGNT GGSTMDRIVE KLKKFGYVED GIQNKERVIE KGSVEDIFYV EEGMLPNSRG GFSSESPLGF GSFGSDDREV RFPWEKPVVE ELEERKSMRS
201: RSKTSLAELT LPESELKRLL KLTFEKKHKT RIGRSGVTQA VVDKIHERWK TSEIVRLKFE GEAALNMKRM HEILERKTGG LVIWRSGNSV SLYRGVSYEV
301: PSVQQNKKIY RKSENSSKLL PTPSYNSVGN PSDIASNSGT SAPLAKLEST NDEKERDYLP KVNYEHEVDK LLDGLGPRYT DWPGCDPLPV DADMLPVTVP
401: GYQPPFRVLP FGVRATLGLR EATALRRIAR TLPPHFALGR NRQLQGLAVA MIKLWEISSI AKVALKRGVQ LTTSERMAEE IKKLTGGILL SRNKDFLVFF
501: RGKNFLSADV TQALLERERM AKVMQDEEEQ ARLRASSLLI PTNNTSELSA EAGTLGETLD ADAKWGKTLD ERHKQKIMRE VEQLRHANLV KKLEQKLSFA
601: ERKLRRAEKA LMKVESFLKP SEYKADPESI TDEERFMFRK LGLRMKAFLL LGRRGVFDGT IENMHLHWKY RELVKIIVKA KTFEQVKKIA LALEAESGGV
701: LVSVDKVSKG YSVIVYRGKD YQRPSTLRPK NLLTKRKALA RSIELQRHEA LMNHISTLQS KVGRIRSEIE QMEKVKDKGD EALYDKLDSA YPSDDENSEV
801: EDGEQGDEAY LKTYNSENDS EIESEVESDN MYPPI

Best Arabidopsis Sequence Match ( AT3G23070.1 )
(BLAST)

001: MAMKPSLHFC PTTVTKKFVY SFQSSFCFRF LRYSSSISLG SCKGVTFSSR NDQIASRRFS FSRDCNNGVW LENWNRIQKR NQPKPPKVVV NYRKEGRFSG
101: SEIVSGDDNR SRDGDGSTME KIVEKLKKYG YMEEVQNKEI EQERRIEKGS VEDIFYVEEG KLPNTRGGFT EESLLGGENV IGSNGDVGFP WEKMSAKEKK
201: ELEAEWTAKK ENRYSLAEMT LPESELRRLR NLTFRTASKM RIRGGGVTQV AVDAIKEKWK SAEIVRLKIE GASALNMRKM HEILEKKTGG LVIWRSGTSI
301: SLYRGVSYEL PSGKWNKQRR EETPPEAVIE NHDETTTMVD KSDEKVHLPQ LEQETTSVEK KDQTSPVVEY EDELDELLDD LGPRFMDWPG DNPLPVDADL
401: LPGAIPDYEP PFRVLPYGVR SSLGPKEATA LRRLARSIPP HFALGRSRQL QGLATAMVRL WEKSMLAKIA IKRGVQSTTS ERMAEDLKKL TGGIMLSRNK
501: DFLVFYRGKN FLSREVADAL VEQERFVRTL QDEEEQARLR GSSALIVPST EPANKLVSAG TLGETLDATG KWGKNLDDDD HSDEVKQEVE ILRHENLVRK
601: LERKLAFAER KLLKAERGLA KVEVCLKPAE QREDPESITD EERFMFRKLG LKMKAFLLLG RRGVFDGTVE NMHLHWKYRE LVKIIVKAKT FDGVKKVALA
701: LEAESGGILV SIDKVTKGYA IIVYRGQDYK RPTMLRPKNL LTKRKALARS IELQRREGLL KHISTMQAKA KQLRAEIEQM EKVTDKGDEE LYNKLDMAYA
801: SSDEETDEED DDDAFPETYA EGEDGEEGEI LAGELSETED KDLDSNESET GFGDDSVLFA EDLHTKSEDL PNKKVRLQHQ S

Arabidopsis Description

CFM3ACRM-domain containing factor CFM3A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4J2U9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.