Factsheet for PGSC0003DMT400002898

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g083350.2.1	Tomato	mitochondrion	96.94	96.94
VIT_05s0020g04770.t01	Wine grape	plastid	62.06	60.75
KRG92332	Soybean	plastid	57.3	60.6
KRH34465	Soybean	plastid	53.23	58.39
CDY10696	Canola	plastid	54.59	56.31
Bra033883.1-P	Field mustard	mitochondrion	54.59	55.66
CDY10350	Canola	plastid	54.59	55.59
AT3G23070.1	Thale cress	plastid	55.04	55.16
TraesCS4A01G150500.1	Wheat	plastid	45.87	54.51
CDY16286	Canola	plastid	52.77	54.12
CDY29740	Canola	plastid	53.34	53.64
GSMUA_Achr3P29330_001	Banana	cytosol, nucleus, plastid	51.53	53.59
Bra036865.1-P	Field mustard	plastid	52.1	53.49
AT4G14510.1	Thale cress	plastid	53.23	51.82
Zm00001d007572_P001	Maize	plastid	48.81	51.19
TraesCS4D01G150700.1	Wheat	plastid	49.04	50.82
TraesCS4B01G161000.1	Wheat	plastid	48.58	50.29
HORVU7Hr1G052190.1	Barley	plastid	49.6	49.38
OQU83762	Sorghum	cytosol, nucleus, plastid	47.45	49.01
Os11t0592400-00	Rice	plastid	48.02	47.86
PGSC0003DMT400069622	Potato	cytosol	13.48	47.41
CDY70711	Canola	nucleus	12.57	43.19
PGSC0003DMT400056675	Potato	cytosol, plastid	36.81	39.73
PGSC0003DMT400014644	Potato	plastid	32.96	35.32
GSMUA_Achr8P05580_001	Banana	plasma membrane	22.2	33.62
PGSC0003DMT400067878	Potato	plastid	27.41	30.17
PGSC0003DMT400003527	Potato	plastid	32.16	27.07
PGSC0003DMT400032783	Potato	mitochondrion	8.38	26.71
Bra036994.1-P	Field mustard	nucleus	20.39	24.29
PGSC0003DMT400030768	Potato	mitochondrion	9.06	21.74
PGSC0003DMT400071187	Potato	mitochondrion	10.31	19.61
PGSC0003DMT400039655	Potato	mitochondrion, plastid	8.27	18.43
PGSC0003DMT400015748	Potato	nucleus, plastid	9.29	15.38

Protein Annotations

EntrezGene:102590119	MapMan:16.12.2.1.3	Gene3D:3.30.110.60	InterPro:CFM3	ncoils:Coil	GO:GO:0000373
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	InterPro:IPR001890	InterPro:IPR035920	UniProt:M0ZKV2
PFAM:PF01985	EnsemblPlantsGene:PGSC0003DMG400001131	PGSC:PGSC0003DMG400001131	EnsemblPlants:PGSC0003DMT400002898	PFscan:PS51295	PANTHER:PTHR31846
PANTHER:PTHR31846:SF13	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0002953F17	RefSeq:XP_006352117.1
InterPro:YhbY_like_sf	SEG:seg	:	:	:	:

Description

RNA binding [Source:PGSC_GENE;Acc:PGSC0003DMG400001131]

Coordinates

chr9:+:55460883..55467663

Molecular Weight (calculated)

100580.0 Da

IEP (calculated)

9.645

GRAVY (calculated)

-0.676

Length

883 amino acids

Sequence
(BLAST)

001: MALVPSHQFY PRTTRLSFLR YSSSKPFKKP NFHAPHDIVN QDCIFKQNPP KRSNFMITPH DVVNQDCIFR RTPSKRSNFV VKNSSRRWNL DTISPNLKSR
101: DSGTSVFSSS WLGKWNGTRN DIKLKKAQIV LNYRNSNGDT SGSDCEESIS GSTMDRIVEK LKKFGYADEA TEKEKKEKRV VEKGSIEDIF FVEEGILPNV
201: RGGFSEESPF GDENVIAKDG VVRFPWERPL VKKEESNSMA SRSRTHLAEL TLPASELRRL TNLALRIKNK SRITGAGVTQ QVVETIREKW KTSEVVRLKV
301: EGAPALNMKR MHEILERKTG GLVIWRSGTS VALYRGVSYE TPSERMKKRI MRRDEIRHKN SPIVDGESNQ NPRNDVDSLR EDSVDTSEEN KNIDRQSEVN
401: YEDEVDKLLD GLGPRYTDWP GSGPLPVDAD LLPGIVPGYQ PPFRILPYGV RSTLAAREAT ALRRLARVLP PHFALGRSRQ HQGLASVMVK LWQRSSIAKI
501: AIKRGVQLTT SERMAEDIKK LTGGMLLSRN KDFLVFYRGK DFLSPEVAEA LLEKERLAKT LQDEEEKARL RASLLLTAGV TTINSSRTAG TLGETLDADA
601: RWGKRLDDKD KENVMREAEL LRHGDLVRKL EKKLAFAERK LMKAERVLSK VEETLNPLDR RAEPDSLTDE ERFMFRKLGL RMKAFLLLGR RGIFDGTVEN
701: MHLHWKYREL VKIMVKAKNF EQVSKIALAL EAESGGVLVS VDKVSKGYAI IVFRGKDYSR PPTLRPKNLL TKRKALARSI ELQRREALLE HISAVQTRVG
801: QLTAEIEQLA SLKDSTDDEL YDKLNSAYSS EDEDSEEEGD DAYIEVFDND NDVVNRSDDS DDTSHPEREF QYVHQNESER ELV

Best Arabidopsis Sequence Match ( AT3G23070.1 )
(BLAST)

001: MAMKPSLHFC PTTVTKKFVY SFQSSFCFRF LRYSSSISLG SCKGVTFSSR NDQIASRRFS FSRDCNNGVW LENWNRIQKR NQPKPPKVVV NYRKEGRFSG
101: SEIVSGDDNR SRDGDGSTME KIVEKLKKYG YMEEVQNKEI EQERRIEKGS VEDIFYVEEG KLPNTRGGFT EESLLGGENV IGSNGDVGFP WEKMSAKEKK
201: ELEAEWTAKK ENRYSLAEMT LPESELRRLR NLTFRTASKM RIRGGGVTQV AVDAIKEKWK SAEIVRLKIE GASALNMRKM HEILEKKTGG LVIWRSGTSI
301: SLYRGVSYEL PSGKWNKQRR EETPPEAVIE NHDETTTMVD KSDEKVHLPQ LEQETTSVEK KDQTSPVVEY EDELDELLDD LGPRFMDWPG DNPLPVDADL
401: LPGAIPDYEP PFRVLPYGVR SSLGPKEATA LRRLARSIPP HFALGRSRQL QGLATAMVRL WEKSMLAKIA IKRGVQSTTS ERMAEDLKKL TGGIMLSRNK
501: DFLVFYRGKN FLSREVADAL VEQERFVRTL QDEEEQARLR GSSALIVPST EPANKLVSAG TLGETLDATG KWGKNLDDDD HSDEVKQEVE ILRHENLVRK
601: LERKLAFAER KLLKAERGLA KVEVCLKPAE QREDPESITD EERFMFRKLG LKMKAFLLLG RRGVFDGTVE NMHLHWKYRE LVKIIVKAKT FDGVKKVALA
701: LEAESGGILV SIDKVTKGYA IIVYRGQDYK RPTMLRPKNL LTKRKALARS IELQRREGLL KHISTMQAKA KQLRAEIEQM EKVTDKGDEE LYNKLDMAYA
801: SSDEETDEED DDDAFPETYA EGEDGEEGEI LAGELSETED KDLDSNESET GFGDDSVLFA EDLHTKSEDL PNKKVRLQHQ S

Arabidopsis Description

CFM3ACRM-domain containing factor CFM3A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4J2U9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.