Factsheet for PGSC0003DMT400056675

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 6
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g039500.2.1	Tomato	plastid	93.4	94.09
Bra024132.1-P	Field mustard	cytosol, plasma membrane, plastid	7.09	58.59
GSMUA_Achr8P05570_001	Banana	cytosol	23.47	55.81
Bra024130.1-P	Field mustard	cytosol	42.3	53.98
CDY30199	Canola	cytosol	42.05	53.67
KRH02705	Soybean	plastid	49.02	50.5
VIT_11s0016g02100.t01	Wine grape	plastid	54.28	50.23
PGSC0003DMT400069622	Potato	cytosol	14.67	47.81
CDY46704	Canola	plastid	45.6	47.64
AT4G29750.1	Thale cress	plastid	45.97	44.71
Os09t0363100-01	Rice	plastid	46.58	40.23
EER96635	Sorghum	plastid	47.31	40.23
Zm00001d020230_P006	Maize	plastid	47.19	40.04
TraesCS5B01G190100.1	Wheat	plastid	46.94	39.47
TraesCS5A01G194600.1	Wheat	plastid	46.82	39.36
HORVU5Hr1G057460.1	Barley	nucleus, plastid	46.7	38.09
TraesCS5D01G197600.1	Wheat	plastid	40.95	37.06
PGSC0003DMT400002898	Potato	mitochondrion	39.73	36.81
PGSC0003DMT400014644	Potato	plastid	34.96	34.71
PGSC0003DMT400067878	Potato	plastid	28.85	29.43
PGSC0003DMT400032783	Potato	mitochondrion	9.66	28.52
PGSC0003DMT400003527	Potato	plastid	32.76	25.55
PGSC0003DMT400030768	Potato	mitochondrion	8.31	18.48
PGSC0003DMT400039655	Potato	mitochondrion, plastid	8.31	17.17
PGSC0003DMT400071187	Potato	mitochondrion	9.41	16.59
PGSC0003DMT400015748	Potato	nucleus, plastid	8.92	13.7

Protein Annotations

EnsemblPlants:PGSC0003DMT400056675	EnsemblPlantsGene:PGSC0003DMG401022041	Gene3D:3.30.110.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf	ncoils:Coil
PANTHER:PTHR31846	PANTHER:PTHR31846:SF7	PFAM:PF01985	PFscan:PS51295	PGSC:PGSC0003DMG401022041	SEG:seg
SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0002956DFD	UniProt:M1BZS3	MapMan:35.1	:

Description

CRS1/YhbY domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG401022041]

Coordinates

chr7:+:35746645..35750341

Molecular Weight (calculated)

93308.9 Da

IEP (calculated)

9.852

GRAVY (calculated)

-0.641

Length

818 amino acids

Sequence
(BLAST)

001: MASTPLSVDY ISSKQLQFSI PLPKIQAWHS CRAKNVVRIY CSSPQTIHSN REKQINEIKK QRKPRPSFVK QVQDKWSVKP TSLREKFPWQ EGNSVSVEEV
101: VERQVQFSEL ENPVVNESVS SGSRVKVNLA PWVHGKQPKI SQVGESSTVG KSLENCEDIG SIREQKSLNK QVNFDCAPLR SPQQQDFEKD IKLESKAEAR
201: VDKGITNAKD SVRLPWEGDK LRKSNAELAE KLIPEAQLKR LRNAALRMVE RIKVGSGGVT QELVDSIQDK WKVDEIVKLR FEGPPSHNMK RTHDILEHRT
301: GGLVIWRSGS SIVLYRGISY KLPCVQSFTS KNHDVDESEY PNNDSCQSLG VKCLNEAAER PRNGSTDLSS EEIVDLSELN MILDEVGPRF KDWSGREPLP
401: VDADLLPAVV PGYRPPFRRL PYGAKLNLKN KEMTYLRRTA RIMPPHFALG RNRQLQGLAA AMVKLWRRSA IAKIAIKRGV LNTSNERMSE ELKVLTGGTL
501: LSRNKDYIVF YRGNDFLPPR VTEALEEAER KSDFLQDQEE QARQRAVTSI DSDTRAPKRP LVAGTLSETM AATSRWGNQP SIEEREKMMR DAAVARHASL
601: VKYLEEKLAL AKGKVKKAEN MLRKLQENRE PSELPTDLEI LSAEERFLFR KMGLSMKPFL LLGRRDVFDG TIENIHLHWK YRELVKIIAE RRNTAQIKHI
701: AITLEAESGG LLVSIDKTTQ GYAIILYRGK NYQRPNEFRP KNLLTKRQAL ARSIELQRRE ALKHHITALQ DKIQNLKSEL EDTNMVEEID EETLFSRLDA
801: SDDEDDMEKV IRGSKVLF

Best Arabidopsis Sequence Match ( AT4G29750.1 )
(BLAST)

001: MALCQFPLNL HTISSSTSSS PRFRRLQPLD TSTKPNFLIR RLRFHSFNHP VRFHTRELSV ITATIDIDTH QRKKTKRKPK PGFFEEISDK WSSRISPKTE
101: KLPWQKQEEQ IQHHEDEEDE EGDESSSNLS SGNGLSDKRT DSNRLYSANE PWSFPRPSGY MSAPWVNNGG SKGVNFTTSS EQGIQSSSFH DVTTVDRYRR
201: DNDSSDRAVD SDLDDGERGM IDSGNNKGIW RTRKSNTVEA ERIVPEHELK RLRNVALRMV ERVKVGSAGI TQALVEAIHE KWEVDEVVKL KFSEPYSLNM
301: KRTHEVLEKK TGGLVIWRSG SSVVLYRGIS YKLKCVQTFI KQNNLEANPE IHRSVEARDY VQEDGNYPKN VPKEQLSELC ELNDLLDEVG PRFHDWTGCA
401: PFPVDADLLP GYVEGYRCPF RILPQGVKPC LSNTEMTEMR RLARTSPPHF ALGRSRELQG LAKAMVKLWA KSAIAKIAIK RGVENTRNER MAEELKRLTR
501: GVLVSRNKEY IVFYRGNDFM PPAVAEALTE RQKEITEVLQ AKEDQAREMA STRATLTSQA KSPKTQLLAG TLAETIAASS RWAPNASSVD IEELKRESAS
601: IKRAALIRDL ELRLLYGKQK LRRAERDLAK VQKDLDPSEL PTDSEIITEE ERLLYRKIGL SMDPFLLLGR REVYDGTIEN MHLHWKHREL VKVIVRGKSL
701: PQVKHIAISL EAESGGVLVS VDKTMKGYAI ILYRGKNYQM PFRLRPSNLL TRKKAFARSI ELQRREALKY HVADLEERIE LLKTGQDDDM ETRNKSDEEE
801: ENLYLRVDES DFSSDEDESL EWESEKNETF LSSEGKEEEE A

Arabidopsis Description

CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JNR2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.