Factsheet for PGSC0003DMT400069622

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008772
PGSC0003DMT400063189
PGSC0003DMT400071807

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01370.1	PGSC0003DMT400063189	AT3G48150.1	21798944
AT3G01370.1	PGSC0003DMT400008772	AT4G39050.1	21798944
AT3G01370.1	PGSC0003DMT400071807	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003527	Potato	plastid	88.45	21.16
Solyc02g087250.2.1	Tomato	extracellular	89.64	17.84
CDY49049	Canola	plastid	66.53	17.11
CDY37526	Canola	plastid	66.14	16.92
Bra039123.1-P	Field mustard	plastid	66.14	16.75
VIT_14s0066g01910.t01	Wine grape	cytosol	68.53	16.48
AT3G01370.1	Thale cress	plastid	64.94	16.12
PGSC0003DMT400032783	Potato	mitochondrion	17.13	15.52
Os04t0464800-00	Rice	plastid	52.59	15.4
KRG93411	Soybean	plastid	62.95	15.28
KRG93409	Soybean	plastid	62.15	15.19
PGSC0003DMT400056675	Potato	cytosol, plastid	47.81	14.67
PGSC0003DMT400014644	Potato	plastid	47.41	14.44
GSMUA_Achr10P...	Banana	plastid	57.37	14.41
PGSC0003DMT400002898	Potato	mitochondrion	47.41	13.48
OQU81723	Sorghum	plastid	54.58	13.11
Zm00001d025633_P007	Maize	plastid	53.78	12.99
Zm00001d025629_P007	Maize	plastid	53.78	12.99
PGSC0003DMT400067878	Potato	plastid	41.43	12.97
HORVU2Hr1G081140.2	Barley	plastid	55.38	12.78
TraesCS2B01G346500.1	Wheat	plastid	54.18	12.53
TraesCS2D01G327400.1	Wheat	plastid	54.18	12.53
TraesCS2A01G335400.1	Wheat	plastid	53.39	11.99
PGSC0003DMT400030768	Potato	mitochondrion	14.74	10.05
PGSC0003DMT400039655	Potato	mitochondrion, plastid	12.75	8.08
PGSC0003DMT400071187	Potato	mitochondrion	14.74	7.97
PGSC0003DMT400015748	Potato	nucleus, plastid	15.14	7.13

Protein Annotations

EnsemblPlants:PGSC0003DMT400069622	EnsemblPlantsGene:PGSC0003DMG400027066	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf	ncoils:Coil	PANTHER:PTHR31846
PANTHER:PTHR31846:SF16	PFAM:PF01985	PFscan:PS51295	PGSC:PGSC0003DMG400027066	SEG:seg	SMART:SM01103
SUPFAM:SSF75471	UniParc:UPI000295FC64	UniProt:M1CKS5	MapMan:35.1	:	:

Description

CFM2 alternative polyadenylation form 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400027066]

Coordinates

chr6:+:52764116..52765560

Molecular Weight (calculated)

28853.9 Da

IEP (calculated)

7.963

GRAVY (calculated)

-0.632

Length

251 amino acids

Sequence
(BLAST)

001: MTDAVKSDAS DTKSPPRVIQ GVGSPDRVRF ELPREAEHTE ETDKLLEGLG PRFTDWWGCE PLPINTDLLL AIVAGYNRPF RLHPYGVKPK LTNDEMTTLR
101: RLGRNRKLQG LAAAIVKLWD KCEIAKVSVK RRVQNTNSEL MAEELKALEN NAEAEKLLLE LKEDEVPQQS DMDKEGITEE ERFMLRKIGL RMKPFLLLGR
201: RGVFDGTDKN MDLHWKYREL VKVITGRKNI EEVHQIARML RGREWGDTSC C

Best Arabidopsis Sequence Match ( AT3G01370.1 )
(BLAST)

0001: MLLPLFHQQP LILAKTFPDR IFPPFLVPNT LVSRRNVSRA NSGIFCSSAS GRKTLPQSAI QRIAEKLRSL GFVEEKHDSP TRRITGEESG KNSPGEIFVP
0101: LPKQLPIHRV GHTIDTSWST PSYPVPKPGS GTAISRYHEL KRVWKKETEM ERKKEEKVPS LAELTLPPAE LRRLRTVGIR LTKKLKIGKA GITEGIVNGI
0201: HERWRTTEVV KIFCEDISRM NMKRTHDVLE TKTGGLVIWR SGSKILLYRG VNYQYPYFVS DRDLAHEAAS GASSMDQGVV DSREKQSIAE SSAPSITNKM
0301: VKPMLTQGVG SPDKVRFQLP GEVQLVEEAD RLLEGLGPRF TDWWAYDPLP VDGDLLPAVV PDYRRPFRLL PYGVSPKLTD DEMTTIRRLG RPLPCHFALG
0401: RNRNLQGLAV AIVKLWEKCE LAKIAVKRGV QNTNSELMAE ELKWLTGGTL ISRDKDFIVL YRGKDFLPSA VSSAIEERRR QTMIMENSSV HGNKLTENEE
0501: EIKPRAVKED IELEAKDQKD HIQTHQMKSR QRNSPEAILE KTSMKLSMAL EKKANAEKVL ADLENRESPQ LSDIDKEGIT NDEKYMLRKI GLKMKPFLLL
0601: GRRGVFDGTI ENMHLHWKYR ELVKIICNEY SIEAAHKVAE ILEAESGGIL VAVEMVSKGY AIIVYRGKNY ERPQCLRPQT LLSKREALKR SVEAQRRKSL
0701: KLHVLKLSNN IEELNRQLVE DSATNETWSD GESSNMMVEE ETENQHTEPE KAREKIELGY SSDLSVPSSG EENWEDDSEG EVDPLTTSSQ EYQEDESESA
0801: SSQRHEGNSL DSTANLSVFA ETGSANASSF HDRSLPHNSF LNANRKLPGS STGSGSQISA LRERKSENDG LVTDLSNRER LILRKQALKM KKRPPFAVGR
0901: SNVVTGLART LKMHFQKNPL AIVNVKGRAN GTSVQEVIAK LKEETGALLV SQEPSKVILY RGWGAEEEMK SFYPNNNVKS SINLPSTRSF VDDPPHVSPA
1001: LIEAIRLECG L

Arabidopsis Description

CFM2CRM-domain containing factor CFM2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8L7C2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.