CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72718
CDX90305
CDX92473
CDY12116
CDY22394
CDY35815
CDY36901
CDY44976
CDY45096
CDY58069
CDY58070
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01370.1	CDY36901	AT3G48150.1	21798944
AT3G01370.1	CDY44976	AT3G48150.1	21798944
AT3G01370.1	CDY58069	AT3G48150.1	21798944
AT3G01370.1	CDY58070	AT3G48150.1	21798944
AT3G01370.1	CDY70805	AT3G48150.1	21798944
AT3G01370.1	CDX72718	AT4G39050.1	21798944
AT3G01370.1	CDX90305	AT4G39050.1	21798944
AT3G01370.1	CDY12116	AT4G39050.1	21798944
AT3G01370.1	CDY22394	AT4G39050.1	21798944
AT3G01370.1	CDX92473	AT5G20280.1	21798944
AT3G01370.1	CDY35815	AT5G20280.1	21798944
AT3G01370.1	CDY45096	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37526	Canola	plastid	95.49	95.01
AT3G01370.1	Thale cress	plastid	84.43	81.5
PGSC0003DMT400069622	Potato	cytosol	17.11	66.53
Solyc08g044250.1.1	Tomato	mitochondrion	3.59	63.64
VIT_14s0066g01910.t01	Wine grape	cytosol	57.17	53.45
PGSC0003DMT400003527	Potato	plastid	55.12	51.29
GSMUA_Achr10P...	Banana	plastid	49.8	48.65
KRG93409	Soybean	plastid	51.13	48.59
KRG93411	Soybean	plastid	47.95	45.26
OQU81723	Sorghum	plastid	47.64	44.5
CDX92233	Canola	cytosol	4.51	44.44
Zm00001d025633_P007	Maize	plastid	46.82	43.98
Zm00001d025629_P007	Maize	plastid	46.82	43.98
Solyc02g087250.2.1	Tomato	extracellular	55.33	42.82
Os04t0464800-00	Rice	plastid	37.5	42.71
TraesCS2B01G346500.1	Wheat	plastid	46.93	42.21
HORVU2Hr1G081140.2	Barley	plastid	47.03	42.19
TraesCS2D01G327400.1	Wheat	plastid	46.62	41.94
CDX95528	Canola	cytosol	19.98	41.23
TraesCS2A01G335400.1	Wheat	plastid	46.62	40.7
CDY30199	Canola	cytosol	25.82	39.31
CDY10696	Canola	plastid	29.41	33.53
CDY46704	Canola	plastid	26.74	33.33
CDY18518	Canola	plastid	27.46	33.25
CDY10350	Canola	plastid	29.3	32.99
CDY51940	Canola	plastid	27.77	32.3
CDX75965	Canola	plastid	27.77	32.26
CDY29740	Canola	plastid	28.89	32.12
CDY16286	Canola	plastid	27.87	31.59
CDY70711	Canola	nucleus	7.48	28.4
CDY34540	Canola	mitochondrion	8.4	25.31
CDY49592	Canola	mitochondrion	8.3	24.92
CDY31205	Canola	mitochondrion	8.5	22.31
CDX83289	Canola	mitochondrion	8.4	22.04
CDX95529	Canola	plastid	6.45	20.79
CDX85512	Canola	golgi	22.75	20.26
CDY27892	Canola	plastid	8.91	19.95
CDY38130	Canola	golgi	22.34	19.76
CDY00840	Canola	plastid	8.81	19.46
CDY66660	Canola	plastid	8.3	17.92
CDY15751	Canola	mitochondrion, plastid, vacuole	6.35	17.87
CDY13722	Canola	mitochondrion, nucleus, plastid	8.91	17.4
CDX83707	Canola	mitochondrion, nucleus, plastid	8.81	17.06
CDY03983	Canola	cytosol	8.4	11.2

Protein Annotations

MapMan:16.12.2.1.2	Gene3D:3.30.110.60	GO:A0A078II55	UniProt:A0A078II55	EnsemblPlants:CDY49049	ProteinID:CDY49049
ProteinID:CDY49049.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00092268001	InterPro:IPR001890	InterPro:IPR035920	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31846
PANTHER:PTHR31846:SF16	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0004EF29C9	InterPro:YhbY_like_sf
SEG:seg	:	:	:	:	:

Description

BnaC05g48770DBnaC05g48770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078II55]

Coordinates

chrLK032808:+:31678..36080

Molecular Weight (calculated)

109346.0 Da

IEP (calculated)

8.553

GRAVY (calculated)

-0.562

Length

976 amino acids

Sequence
(BLAST)

001: MLLPVCHQQQ PLLPPKALPD RVFPPFLIPR TLRASFVVCS SSSDRKTLPQ SAIQRIADKL RSLGFAEETN HGSPTTSGQN SPGEIFVPLP NQLPIHRVGH
101: TIDTSWSTPS YPVPKPGSVW KKEKQSERKN EEKVPSLAEL TLPPGELRRL RSEGIRLTKK IKIGKAGITE GIVNGIHERW RTTEVVKIFC EDISGMNMKR
201: THDVLETKTG GLVIWRSGSK ILLYRGVNYH YPYFVSDGNL PHASSLETAS EASYVGDSRE KQTTAESSPA SVTNKMVNKP LLIQGVGSPD KVRFQLPGEV
301: QLVEEADRLL EGLGPRFTDW WAYDPLPVDG DLLPAIVPEY RRPFRLLPYG VSPKLTDDEM TILRRLGRPL PCHFALGRNR NLQGLAVAIV KLWEKCEVAK
401: IAVKRGVQNT NSELMAEELK WLTGGTLISR DKDFIVLYRG KDFLPSAVSS AIEERRRQTM IMDKSSVHGN ILTENEEEIK LQAVTKDHQM KPRQRKSPEA
501: ILERTSIKLS MALEKKANAE RILAELESRE SPQQSDIDKE GITEDEKYML RKIGLKMKPF LLLGRRGVFD GTIENMHLHW KYRELVKIIC HEHSMEAAHE
601: VAEILEAESG GILVAVEMVS KGYAIIVYRG KNYERPSCLR PQTLLSKREA LKRSVEAQRR KSLKLHVLKL SNNIDELNRQ LVEDSATNET CSDGEPSSRV
701: VQEETENQNV EPEKSRGETE LSYSSDSTIP SSGEENWEDD SEDEVDQSTT SSHAYKKDET GPGSSRRHDG DSTANISILT ETGFAEASSF HDRYMPRNSF
801: LNAERKVPTG QELGSSTRSG SALTESKREN HELVADLSNR ERLILRKQAL KMKKRPPFAV GESNVVTGLA KTLKTHFQRN PLAIVNVKGR AKGTSVQEVI
901: AKLKEETGAL LVSQEPSKVI LYRGWGAEEE MKSFYPNSNV KNSINLTTSS QRSLVNDPPF VSPALIEAIR LECGLE

Best Arabidopsis Sequence Match ( AT3G01370.1 )
(BLAST)

0001: MLLPLFHQQP LILAKTFPDR IFPPFLVPNT LVSRRNVSRA NSGIFCSSAS GRKTLPQSAI QRIAEKLRSL GFVEEKHDSP TRRITGEESG KNSPGEIFVP
0101: LPKQLPIHRV GHTIDTSWST PSYPVPKPGS GTAISRYHEL KRVWKKETEM ERKKEEKVPS LAELTLPPAE LRRLRTVGIR LTKKLKIGKA GITEGIVNGI
0201: HERWRTTEVV KIFCEDISRM NMKRTHDVLE TKTGGLVIWR SGSKILLYRG VNYQYPYFVS DRDLAHEAAS GASSMDQGVV DSREKQSIAE SSAPSITNKM
0301: VKPMLTQGVG SPDKVRFQLP GEVQLVEEAD RLLEGLGPRF TDWWAYDPLP VDGDLLPAVV PDYRRPFRLL PYGVSPKLTD DEMTTIRRLG RPLPCHFALG
0401: RNRNLQGLAV AIVKLWEKCE LAKIAVKRGV QNTNSELMAE ELKWLTGGTL ISRDKDFIVL YRGKDFLPSA VSSAIEERRR QTMIMENSSV HGNKLTENEE
0501: EIKPRAVKED IELEAKDQKD HIQTHQMKSR QRNSPEAILE KTSMKLSMAL EKKANAEKVL ADLENRESPQ LSDIDKEGIT NDEKYMLRKI GLKMKPFLLL
0601: GRRGVFDGTI ENMHLHWKYR ELVKIICNEY SIEAAHKVAE ILEAESGGIL VAVEMVSKGY AIIVYRGKNY ERPQCLRPQT LLSKREALKR SVEAQRRKSL
0701: KLHVLKLSNN IEELNRQLVE DSATNETWSD GESSNMMVEE ETENQHTEPE KAREKIELGY SSDLSVPSSG EENWEDDSEG EVDPLTTSSQ EYQEDESESA
0801: SSQRHEGNSL DSTANLSVFA ETGSANASSF HDRSLPHNSF LNANRKLPGS STGSGSQISA LRERKSENDG LVTDLSNRER LILRKQALKM KKRPPFAVGR
0901: SNVVTGLART LKMHFQKNPL AIVNVKGRAN GTSVQEVIAK LKEETGALLV SQEPSKVILY RGWGAEEEMK SFYPNNNVKS SINLPSTRSF VDDPPHVSPA
1001: LIEAIRLECG L

Arabidopsis Description

CFM2CRM-domain containing factor CFM2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8L7C2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.