CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92233	Canola	cytosol	14.38	68.69
CDY18518	Canola	plastid	97.25	57.07
CDY51940	Canola	plastid	93.23	52.56
CDX75965	Canola	plastid	93.02	52.38
AT3G18390.1	Thale cress	plastid	89.22	49.76
KRH41639	Soybean	mitochondrion, plastid	63.21	41.13
TraesCS1A01G376400.1	Wheat	plastid	61.73	40.9
KRH48490	Soybean	nucleus	67.86	40.58
VIT_17s0000g03610.t01	Wine grape	plastid	71.04	40.48
KRH39182	Soybean	plastid	67.65	40.46
GSMUA_Achr3P26360_001	Banana	plastid	63.64	39.19
Solyc03g119450.2.1	Tomato	nucleus	67.65	39.02
PGSC0003DMT400014644	Potato	plastid	67.23	38.59
Os05t0551900-00	Rice	plastid	62.79	37.98
HORVU1Hr1G083550.4	Barley	plasma membrane	61.95	37.81
TraesCS1D01G383500.1	Wheat	mitochondrion, plastid	61.95	37.61
TraesCS1B01G396800.2	Wheat	plastid	61.73	36.87
KXG22496	Sorghum	plastid	61.95	36.58
Zm00001d038922_P001	Maize	extracellular	61.1	36.35
CDY30199	Canola	cytosol	43.13	31.83
CDY70711	Canola	nucleus	16.91	31.13
CDY46704	Canola	plastid	43.13	26.05
CDY10696	Canola	plastid	44.82	24.77
CDY10350	Canola	plastid	45.03	24.57
CDY16286	Canola	plastid	43.76	24.04
CDY29740	Canola	plastid	43.76	23.58
CDY34540	Canola	mitochondrion	15.22	22.22
CDY49592	Canola	mitochondrion	15.22	22.15
CDY49049	Canola	plastid	41.23	19.98
CDY37526	Canola	plastid	41.01	19.78
CDY31205	Canola	mitochondrion	15.01	19.09
CDX83289	Canola	mitochondrion	14.8	18.82
CDY27892	Canola	plastid	16.07	17.43
CDX85512	Canola	golgi	40.17	17.34
CDY00840	Canola	plastid	16.07	17.19
CDY38130	Canola	golgi	38.9	16.68
CDY66660	Canola	plastid	14.38	15.04
CDY13722	Canola	mitochondrion, nucleus, plastid	14.38	13.6
CDX83707	Canola	mitochondrion, nucleus, plastid	14.38	13.49
CDY15751	Canola	mitochondrion, plastid, vacuole	9.73	13.26
CDY03983	Canola	cytosol	14.16	9.15
CDX95529	Canola	plastid	2.33	3.63

Protein Annotations

EnsemblPlants:CDX95528	EnsemblPlantsGene:GSBRNA2T00101353001	GO:A0A078E852	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf	ncoils:Coil
PANTHER:PTHR31846	PANTHER:PTHR31846:SF4	PFAM:PF01985	PFscan:PS51295	ProteinID:CDX95528	ProteinID:CDX95528.1
SEG:seg	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0004EDD3CB	MapMan:35.1	:

Description

BnaC01g34200D

Coordinates

chrLK031889:-:1013224..1015946

Molecular Weight (calculated)

54003.8 Da

IEP (calculated)

7.133

GRAVY (calculated)

-0.586

Length

473 amino acids

Sequence
(BLAST)

001: MCLSAGDEAR HAKDYQNAPP EIKDPIVKNP IRKEGMTEEE AEFNSLLDSL GPRFHEWWGT GVLPVNADLL PPTILGYKTP FRLLPTGMRS NLTNAEMTNL
101: RKIGKTLPCH FSLGRNRNHQ GLAAAILKLW EKSLIAKIAV KRGIQNTNNK LMSDEIKTLT GGVLLLRNKY YIVIYRGKDF LPSSVAATLA ERQELTKEIQ
201: DVEEKVRIRD IEATQPVGEK VLAEAGTLAE FYEAQARWGK EITPDHREKM IEEASRIASA RVVKRIQHKL DLSQSKFDRA EKLLSKIEAS MIPNGPDYDQ
301: EVISEEERIM FRKVGLKMKS YLPLGIRGVF DGVIENMHLH WKHRELVKLI SKQKSFAFVE DTARLLEYES GGVLVAIEKV PKGFALIYYR GKNYQRPVSL
401: RPRNLLTKAK ALKRSIAIQR HEALSQHISE LEKTIEQMQN ELTAKNPSYN ESEWENDDDD DGEEEKDDES DWD

Best Arabidopsis Sequence Match ( AT3G18390.1 )
(BLAST)

001: MALAPLNFTE MPLRSSLPLT SSSRYCSSPS LHALLFYSLG VKPSRQQIVR PFSSLRTSER SNNRSNNNRR LDQRNHKPTP PWIDKWPPSS SGAGGDHAGK
101: KGGENNGGDR IRSAEEEAEA KLRYLEKDKG QNAIERIVLR LRNLGLGSDD EDDVEDDEGG GINGGDVKPV TGEERLGDLL KREWVRPDMM LAEGEESEEE
201: DEVLLPWEKN EEEQAAERVV GEGGVAVMQK RRARAPSLAE LTVEDSELRR LRRDGMYLRV RINIPKAGLT QAVMEKIYDT WRKEELVRLK FHEVLARDMK
301: TAHEIVERRT GGMVIWRAGS VMVVYRGLDY KGPPVISNQM AGPKETLFVP DVSSAGDEAT NAKDNQSAPL VIKDPIIKNP IRKENMTEEE VEFNSLLDSL
401: GPRFQEWWGT GVLPVDADLL PPTIPGYKTP FRLLPTGMRS NLTNAEMTNL RKIGKTLPCH FALGRNRNHQ GLAAAILQIW EKSLIAKIAV KRGIQNTNNK
501: LMADEVKTLT GGVLLLRNKY YIVIYRGKDF LPSSVAATLA ERQELTKEIQ DVEERVRNRE IEAVQPVGDK VPAEAGTLAE FYEAQARWGK EITPDHREKM
601: IEEASRVANA RVVKRIQHKL NLAQSKFQRA EKLLSKIEAS MIPNGPDYDQ EVISEEERAM FRKVGLKMKA YLPIGIRGVF DGVIENMHLH WKHRELVKLI
701: SKQKNQAFVE ETARLLEYES GGVLVAIEKV PKGFALIYYR GKNYRRPISL RPRNLLTKAK ALKRSIAMQR HEALSQHISE LERTIEQMQS QLTSKNPSYS
801: ESEWENDEDD DDDEEEEKDD VEDNESDWDE TDGESAISSI EEADMSSR

Arabidopsis Description

EMB1865CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9LS51]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.