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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX95528 Canola cytosol 49.76 89.22
CDX75965 Canola plastid 85.26 86.07
CDY18518 Canola plastid 81.49 85.73
CDY51940 Canola plastid 84.67 85.58
Bra001704.1-P Field mustard plastid 84.67 85.48
Bra037586.1-P Field mustard plastid 81.37 84.46
CDX95529 Canola plastid 26.42 73.93
VIT_17s0000g03610.t01 Wine grape plastid 59.91 61.2
TraesCS1A01G376400.1 Wheat plastid 50.47 59.94
KRH48490 Soybean nucleus 55.78 59.8
KRH39182 Soybean plastid 55.54 59.54
Solyc03g119450.2.1 Tomato nucleus 57.19 59.15
PGSC0003DMT400014644 Potato plastid 56.84 58.5
GSMUA_Achr3P26360_001 Banana plastid 52.71 58.2
Os05t0551900-00 Rice plastid 53.3 57.8
KRH41639 Soybean mitochondrion, plastid 48.7 56.81
HORVU1Hr1G083550.4 Barley plasma membrane 51.89 56.77
TraesCS1D01G383500.1 Wheat mitochondrion, plastid 52.12 56.74
KXG22496 Sorghum plastid 53.42 56.55
Zm00001d038922_P001 Maize extracellular 52.36 55.85
TraesCS1B01G396800.2 Wheat plastid 51.89 55.56
AT5G16180.1 Thale cress endoplasmic reticulum 29.95 35.28
AT3G23070.1 Thale cress plastid 34.08 32.8
AT4G14510.1 Thale cress plastid 34.2 31.97
AT4G29750.1 Thale cress plastid 30.66 30.92
AT3G01370.1 Thale cress plastid 31.01 26.01
AT4G13070.1 Thale cress mitochondrion 9.55 23.62
AT2G28480.1 Thale cress mitochondrion 10.14 23.12
AT3G25440.1 Thale cress plastid 10.38 19.82
AT3G27550.2 Thale cress mitochondrion 10.14 15.72
Protein Annotations
Gene3D:3.30.110.60MapMan:35.1EntrezGene:821368UniProt:A0A178VP02ProteinID:AEE76091.1ArrayExpress:AT3G18390
EnsemblPlantsGene:AT3G18390RefSeq:AT3G18390TAIR:AT3G18390RefSeq:AT3G18390-TAIR-GEnsemblPlants:AT3G18390.1TAIR:AT3G18390.1
EMBL:AY063908Unigene:At.20890ProteinID:BAB01105.1ncoils:CoilSymbol:EMB1865GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0008150GO:GO:0009507GO:GO:0009536GO:GO:0009719GO:GO:0009737
InterPro:IPR001890InterPro:IPR035920RefSeq:NP_188468.1ProteinID:OAP06582.1PFAM:PF01985PO:PO:0000013
PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PFscan:PS51295
PANTHER:PTHR31846PANTHER:PTHR31846:SF4UniProt:Q9LS51InterPro:RNA-binding_CRMSMART:SM01103SUPFAM:SSF75471
UniParc:UPI000009EC65InterPro:YhbY_like_sfSEG:seg:::
Description
EMB1865CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9LS51]
Coordinates
chr3:+:6313471..6318062
Molecular Weight (calculated)
96002.1 Da
IEP (calculated)
5.809
GRAVY (calculated)
-0.685
Length
848 amino acids
Sequence
(BLAST)
001: MALAPLNFTE MPLRSSLPLT SSSRYCSSPS LHALLFYSLG VKPSRQQIVR PFSSLRTSER SNNRSNNNRR LDQRNHKPTP PWIDKWPPSS SGAGGDHAGK
101: KGGENNGGDR IRSAEEEAEA KLRYLEKDKG QNAIERIVLR LRNLGLGSDD EDDVEDDEGG GINGGDVKPV TGEERLGDLL KREWVRPDMM LAEGEESEEE
201: DEVLLPWEKN EEEQAAERVV GEGGVAVMQK RRARAPSLAE LTVEDSELRR LRRDGMYLRV RINIPKAGLT QAVMEKIYDT WRKEELVRLK FHEVLARDMK
301: TAHEIVERRT GGMVIWRAGS VMVVYRGLDY KGPPVISNQM AGPKETLFVP DVSSAGDEAT NAKDNQSAPL VIKDPIIKNP IRKENMTEEE VEFNSLLDSL
401: GPRFQEWWGT GVLPVDADLL PPTIPGYKTP FRLLPTGMRS NLTNAEMTNL RKIGKTLPCH FALGRNRNHQ GLAAAILQIW EKSLIAKIAV KRGIQNTNNK
501: LMADEVKTLT GGVLLLRNKY YIVIYRGKDF LPSSVAATLA ERQELTKEIQ DVEERVRNRE IEAVQPVGDK VPAEAGTLAE FYEAQARWGK EITPDHREKM
601: IEEASRVANA RVVKRIQHKL NLAQSKFQRA EKLLSKIEAS MIPNGPDYDQ EVISEEERAM FRKVGLKMKA YLPIGIRGVF DGVIENMHLH WKHRELVKLI
701: SKQKNQAFVE ETARLLEYES GGVLVAIEKV PKGFALIYYR GKNYRRPISL RPRNLLTKAK ALKRSIAMQR HEALSQHISE LERTIEQMQS QLTSKNPSYS
801: ESEWENDEDD DDDEEEEKDD VEDNESDWDE TDGESAISSI EEADMSSR
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.